Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0954
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0810 - 23359541-23360018,23360108-23360237,23360366-233604... 32 0.40
05_05_0177 - 22993844-22994617 30 1.2
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 29 2.8
03_02_0507 - 8999902-9000649,9001106-9001225,9001314-9001394,900... 28 5.0
11_08_0003 + 27492503-27492812,27492863-27493148,27495399-274956... 28 6.6
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 28 6.6
10_08_1020 - 22309900-22310361,22310455-22310697,22311164-22311223 27 8.7
01_06_1258 + 35806557-35806932,35807517-35807679,35807789-358078... 27 8.7
01_06_0840 + 32343700-32344138,32345329-32345419,32345584-323458... 27 8.7
>12_02_0810 -
23359541-23360018,23360108-23360237,23360366-23360496,
23360541-23360635,23362461-23362593,23363830-23364029
Length = 388
Score = 31.9 bits (69), Expect = 0.40
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Frame = +3
Query: 126 GKTKLELHPRKRKLKSSKDHSRESKSDSTQEASSLSHNITHSNPYQMYIHIRKQIHHRQR 305
G+T E+ R K R+S + +SSL++ H M I I +Q H
Sbjct: 240 GRTDNEIKNYWRTHMRKKAQERKSNMSPSSSSSSLTYQSCHPETPSMIIGIEEQELHGGS 299
Query: 306 G-LFPVKPKPPKDFNKYLMNRCTYTLQR-NVNPEP 404
G + + P D + Y M++ ++ NV P P
Sbjct: 300 GCITSIMKSTPVDMDGYPMDQIWMEIEAPNVLPGP 334
>05_05_0177 - 22993844-22994617
Length = 257
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = +3
Query: 162 KLKSSKDHSRESKSDSTQEAS-SLSHNITHSNPYQMYIHIRKQIHHRQRGLFPVKPKPPK 338
+ +SSK + +D+T A + S +T S+P ++ + L P PP+
Sbjct: 7 RTRSSKSKPAAAAADTTSTALVAASKRLTFSSPSLK--DLQSLLVPPHAALSSSSPSPPR 64
Query: 339 DFNKYLMNRCTYTLQRNVNPEPQIEIPH 422
F++ + C + RN+ Q + PH
Sbjct: 65 VFHRIRVAACALRVLRNLQSAGQQQQPH 92
>05_06_0219 +
26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 476 IVYGYNIWLKKKSLCWQLNKKYFRVHGR 559
IV G +IWL+ K L W ++ + FR+ G+
Sbjct: 7 IVLGSHIWLEDKDLAW-IDGEVFRIEGQ 33
>03_02_0507 -
8999902-9000649,9001106-9001225,9001314-9001394,
9001591-9001613
Length = 323
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +3
Query: 120 EQGKTKLELHPRKRKLKSSKDHSRESKSDSTQEASSLSHNITHSNPYQMYIHIRKQIHHR 299
E GK + H KRK K S+ H R DS+ E++S S + + +RK+ R
Sbjct: 187 ESGKHRS--HSEKRKHKKSRKHKRR-YDDSSDESNSESDDKESKRRRKEEKRLRKEERRR 243
Query: 300 QR 305
+R
Sbjct: 244 RR 245
>11_08_0003 +
27492503-27492812,27492863-27493148,27495399-27495652,
27496645-27496830,27497042-27498117
Length = 703
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 128 QNQIGVASKKKKTKILQGSFARIEKRFH 211
Q Q+ + KK+TKI +G+F + K H
Sbjct: 392 QEQLDTITNKKRTKIGKGTFGEVYKGLH 419
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 279 RKQIHHRQRGLFPVKPKPPKDFNKYLMN 362
RK+ GLFP P PP D K N
Sbjct: 10 RKRFREANPGLFPANPTPPADGTKKKKN 37
>10_08_1020 - 22309900-22310361,22310455-22310697,22311164-22311223
Length = 254
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 172 PPRIIRENRKAIPHKKPAPSVIISH 246
PP + + RK IPH+ P S+I+ +
Sbjct: 230 PPTLPPKRRKGIPHRAPFGSLIVEY 254
>01_06_1258 +
35806557-35806932,35807517-35807679,35807789-35807837,
35807943-35808866,35808954-35809049,35809142-35809257,
35809345-35809447,35809570-35809658,35809750-35809900,
35809995-35810141,35810238-35810366,35810451-35810529,
35810616-35810725
Length = 843
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 446 FYHLRWQIVWYLDLWLRIDIPL 381
F H W+ +W + LWL +++ L
Sbjct: 285 FVHENWKRIWLVALWLAVNVGL 306
>01_06_0840 + 32343700-32344138,32345329-32345419,32345584-32345866,
32346023-32346097,32346470-32346514,32346889-32346979,
32347060-32347118,32347621-32347704,32348109-32348168,
32348585-32348637,32348724-32348757,32349334-32350335,
32350477-32351035,32351873-32352372,32352793-32353200
Length = 1260
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 171 SSKDHSRESKSDSTQEASSLSHNITHSNPYQMYIHIRKQIHHR--QRGLFPV 320
++ D R +K D QEA S SN M ++RKQ+ + QRG PV
Sbjct: 896 AAMDCWRRAK-DRGQEAQFCSKYFVSSNTMNMLSNMRKQLQNELAQRGFVPV 946
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,391,310
Number of Sequences: 37544
Number of extensions: 380245
Number of successful extensions: 937
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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