Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0954
(599 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38163| Best HMM Match : Complex1_30kDa (HMM E-Value=0.73) 35 0.044
SB_41392| Best HMM Match : Nanovirus_C8 (HMM E-Value=6.7) 33 0.18
SB_23919| Best HMM Match : Nanovirus_C8 (HMM E-Value=7.2) 33 0.18
SB_36686| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_55227| Best HMM Match : Ank (HMM E-Value=1.9e-30) 29 2.2
SB_37120| Best HMM Match : EB (HMM E-Value=4.2) 29 2.2
SB_40761| Best HMM Match : UPF0020 (HMM E-Value=9.5e-06) 29 2.9
SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 29 3.8
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 29 3.8
SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14) 29 3.8
SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25) 29 3.8
SB_46143| Best HMM Match : zf-CCHC (HMM E-Value=0.26) 29 3.8
SB_37473| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 29 3.8
SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 29 3.8
SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25) 29 3.8
SB_53615| Best HMM Match : GETHR (HMM E-Value=5.3e-09) 28 6.6
SB_52822| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_37160| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_30473| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10) 27 8.8
SB_18224| Best HMM Match : Maf (HMM E-Value=6.8) 27 8.8
>SB_38163| Best HMM Match : Complex1_30kDa (HMM E-Value=0.73)
Length = 268
Score = 35.1 bits (77), Expect = 0.044
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +3
Query: 135 KLELHPRKRKLKSSKDHSRESKSDSTQ-EASSLSHNITHSNPYQMYIHIRKQIHHRQRGL 311
+++ H RK + + R ++ Q E S L ++H +PY+++ +R+Q+ R + +
Sbjct: 113 RMDFHSRK-----DEPNKRSAEQGGLQSEYSRLRLVLSHIDPYKLHSALRRQLKRRNKDV 167
Query: 312 FPVKPKPPKDFNKYLMNRC 368
P++ P + K +RC
Sbjct: 168 HPLRKVPQRITPKLRKHRC 186
>SB_41392| Best HMM Match : Nanovirus_C8 (HMM E-Value=6.7)
Length = 295
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 324 PKPPKD-FNKYLMNRCTYTLQRNVNPEPQIEIPHNLPP 434
P PK+ N++L + T Q+NV P+PQ IP L P
Sbjct: 1 PSSPKNTMNRFLRTQSTPGFQQNVYPQPQTLIPQALAP 38
>SB_23919| Best HMM Match : Nanovirus_C8 (HMM E-Value=7.2)
Length = 308
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 324 PKPPKD-FNKYLMNRCTYTLQRNVNPEPQIEIPHNLPP 434
P PK+ N++L + T Q+NV P+PQ IP L P
Sbjct: 18 PSSPKNTMNRFLRTQSTPGFQQNVYPQPQTLIPQALAP 55
>SB_36686| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = -2
Query: 508 LFQPDVVSVNDAFLSPES*IHFII*GGKLCGISICGSGLTFLCRVYVQRFIRYLLKSFGG 329
LF P SVND + + +H++ + I G G +L + Y++ R L G
Sbjct: 374 LFHPKDASVNDGIATEHTSVHYVSMDDAIAMIKRVGVG-CYLSKPYIKNAFRVLPIHPEG 432
Query: 328 FGLTGNK 308
+ L G K
Sbjct: 433 YNLLGMK 439
>SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = +2
Query: 164 TKILQGSFARIEKRFHTRSQLPQS*YHTQQPVSDVHTYTETDSSPSTWF-VSSQTKTSKR 340
T+ Q SF + FH++ + Q + Q VSD E + S +F V+++ + +
Sbjct: 299 TRYKQQSFESKKNMFHSKKEQKQLLENQTQVVSDPGWNAEIKGTASAYFQVNNEIQQDEN 358
Query: 341 FQ*ISDESLYIHPTKECQS*ATNRDTTQFATSNDKMNL 454
+ S + I T CQ + +D +TS N+
Sbjct: 359 IESTSQKDENIEST--CQKSTSQQDKNIKSTSQQDKNI 394
>SB_55227| Best HMM Match : Ank (HMM E-Value=1.9e-30)
Length = 662
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 460 QEKERHRLRIQHLVEKEKLVLAVEQEIL 543
+ +E +LR H VE+EKL ++ EQE++
Sbjct: 565 ESEELSKLRTSHQVEQEKLRISFEQEVV 592
>SB_37120| Best HMM Match : EB (HMM E-Value=4.2)
Length = 376
Score = 29.5 bits (63), Expect = 2.2
Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Frame = +2
Query: 128 QNQIGVASKKKKTKILQGSFARIEKRFHTRSQLPQS*Y----HTQQPVSDV--HTYTETD 289
Q G + K K GS I K HT + P S +T+ P S HTYTE+
Sbjct: 5 QTLTGSPTSKTKAHTYTGSPTSITKA-HTYTGSPTSKTKAHTYTESPTSKTKAHTYTESP 63
Query: 290 SSPSTWFVSSQTKTSKRFQ*ISDESLYIHPTKECQS*ATNRDTTQFA 430
+S + + + TSK S PT+ Q +N TQ A
Sbjct: 64 TSKTVVHTYTGSPTSKTKAHTYTGSTKARPTQGVQHLPSNHIPTQGA 110
>SB_40761| Best HMM Match : UPF0020 (HMM E-Value=9.5e-06)
Length = 1176
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 456 DSGERKASFTDTTSG*KRKACAGS*TRNTFECTGA 560
D + +DTT G ++AC G+ + ++ EC GA
Sbjct: 882 DKDDNTTDTSDTTGGGNKEACIGADSVDSAECDGA 916
>SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 123 QGKTKLELHPRKRKLKSS--KDHSRESKSDSTQEASSLSHNITHSN 254
+G + +H K SS K HSRE+K T SHN+T +
Sbjct: 193 RGTNTIPVHATTHKSPSSHPKTHSRENKQIQTCGNCGTSHNVTQKS 238
>SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 123 QGKTKLELHPRKRKLKSS--KDHSRESKSDSTQEASSLSHNITHSN 254
+G + +H K SS K HSRE+K T SHN+T +
Sbjct: 19 RGTNTIPVHATTHKSPSSHPKTHSRENKQIQTCGNCGTSHNVTQKS 64
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 109 PVDRNKAKPNWSCIQEKEN*NPPRIIRENRKAIPHKKPA 225
PV+ +K+ PN + K N +PP+ + +N K P+ A
Sbjct: 3536 PVEASKSNPNPQETEFKRNPHPPQKVLQNPKGNPYPHEA 3574
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 556 PVHSKVFLVQLPAQAFLFQPDVVSVN 479
P HSK FL ++ + +QP VVS N
Sbjct: 715 PPHSKQFLFKVAVNGYEYQPQVVSSN 740
>SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4634
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +3
Query: 180 DHSRESKSDSTQEASSLSHNITHSNPYQMYIHIRKQIHHRQRGLFPVKPKPPKDFNK 350
+ S S++ ++QE +S+S ++ S +H+ QI+H VK P +DF +
Sbjct: 275 EFSLASRNKTSQEGASVSFAVSRSIAQHGEVHVYWQIYHVLSNGSLVKLLPGQDFEQ 331
>SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)
Length = 679
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 123 QGKTKLELHPRKRKLKSS--KDHSRESKSDSTQEASSLSHNITHSN 254
+G + +H K SS K HSRE+K T SHN+T +
Sbjct: 194 RGTNTIPVHATTHKSPSSHPKTHSRENKQIQTCGNCGTSHNVTQKS 239
>SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)
Length = 1238
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 123 QGKTKLELHPRKRKLKSS--KDHSRESKSDSTQEASSLSHNITHSN 254
+G + +H K SS K HSRE+K T SHN+T +
Sbjct: 180 RGTNTIPVHATTHKSPSSHPKTHSRENKQIQTCGNCGTSHNVTQKS 225
>SB_46143| Best HMM Match : zf-CCHC (HMM E-Value=0.26)
Length = 245
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 123 QGKTKLELHPRKRKLKSS--KDHSRESKSDSTQEASSLSHNITHSN 254
+G + +H K SS K HSRE+K T SHN+T +
Sbjct: 180 RGTNTIPVHATTHKSPSSHPKTHSRENKQIQTCGNCGTSHNVTQKS 225
>SB_37473| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 123 QGKTKLELHPRKRKLKSS--KDHSRESKSDSTQEASSLSHNITHSN 254
+G + +H K SS K HSRE+K T SHN+T +
Sbjct: 111 RGTNTIPVHATTHKSPSSHPKTHSRENKQIQTCGNCGTSHNVTQKS 156
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Frame = +3
Query: 126 GKTKLELHPRKRKLKSSKDHSRESKS------DSTQEASSLSHNITHSNPYQMYIHIRKQ 287
GK+K+E K+K K SK S+ K+ + +E +S ++I + P +Y H +
Sbjct: 1471 GKSKVEKTDNKKKDKKSKKSSKSKKTKIYHAQKTKEEKASKKNDIVVNRPPIIY-HPPPE 1529
Query: 288 IHHR 299
++HR
Sbjct: 1530 VYHR 1533
>SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 1329
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 123 QGKTKLELHPRKRKLKSS--KDHSRESKSDSTQEASSLSHNITHSN 254
+G + +H K SS K HSRE+K T SHN+T +
Sbjct: 180 RGTNTIPVHATTHKSPSSHPKTHSRENKQIQTCGNCGTSHNVTQKS 225
>SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25)
Length = 1186
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 123 QGKTKLELHPRKRKLKSS--KDHSRESKSDSTQEASSLSHNITHSN 254
+G + +H K SS K HSRE+K T SHN+T +
Sbjct: 180 RGTNTIPVHATTHKSPSSHPKTHSRENKQVQTCGNCGTSHNVTQKS 225
>SB_53615| Best HMM Match : GETHR (HMM E-Value=5.3e-09)
Length = 653
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 126 GKTKLELHPRKRKLKSSKDHSRESKSDSTQEASSLSHNITHS 251
GK L R+ S H+RES S+ST SL + TH+
Sbjct: 295 GKENLSESTHARESLSESTHARESLSESTHARESLKES-THA 335
>SB_52822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 120 EQGKTKLELHPRKRKLKSSKDHSRESKSDSTQ 215
+ GK+ LE+H RK +DH + D +
Sbjct: 13 DSGKSLLEMHQENRKKGKKRDHKADDDEDDEE 44
>SB_37160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +3
Query: 237 NITHSNPYQMYIHIRKQIHHRQRGLFPVKPKPPKDFNKYLMNRCTY 374
N +P++ +IR+++ R F ++ PPK +N+Y + C +
Sbjct: 5 NYPKQSPHRTGGYIREKLQGYIRE-FVLRVSPPKGYNRYFFSECKF 49
>SB_30473| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 27.9 bits (59), Expect = 6.6
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Frame = +3
Query: 129 KTKLELHPRKRKLKSSKD-HSRESKSDSTQEASSLSHNITHSNPYQMYI---HIRKQIH- 293
+T H KRK K +KD H + +D + +A L H+ T +NP + + H Q
Sbjct: 185 ETGQRTHGAKRKRKRTKDEHKVVNHADGSDDAKKL-HSKTDTNPSKSNVKKGHNDTQTKT 243
Query: 294 HRQRGLFPVKPKPPKDFNKYLMNRCTYTLQRNVNPEPQI 410
+ + + + K L C RNV P+ Q+
Sbjct: 244 SHENPMMDAQKQAEKVLGASLEGICKVYHVRNVAPKKQM 282
>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = -3
Query: 162 FFFLD--ATPIWFCLVPIYWS 106
F FLD A +WF LVP+ WS
Sbjct: 101 FLFLDRKAVYLWFALVPMIWS 121
>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
Length = 1029
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/70 (24%), Positives = 30/70 (42%)
Frame = +3
Query: 216 EASSLSHNITHSNPYQMYIHIRKQIHHRQRGLFPVKPKPPKDFNKYLMNRCTYTLQRNVN 395
E SSL Q + ++Q+HH+Q+ + D + Y T LQR +
Sbjct: 743 EYSSLQQQHLQQQLQQQQLQQQQQLHHQQQQQQQLAKSDDTDMDTYQEQEITQELQRAMM 802
Query: 396 PEPQIEIPHN 425
+ Q+ + H+
Sbjct: 803 KQ-QVGLDHD 811
>SB_18224| Best HMM Match : Maf (HMM E-Value=6.8)
Length = 603
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 170 ILQGSFARIEKRFH-TRSQLPQS*YHTQQPVSDVHTYTE 283
+LQ SFAR K TRS LP H PV+ + Y E
Sbjct: 116 VLQPSFARFWKSNQKTRSALPYPKTHKYDPVAFIRGYHE 154
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,128,086
Number of Sequences: 59808
Number of extensions: 443490
Number of successful extensions: 1224
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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