Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0954
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z93380-3|CAB07600.1|  339|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81589-5|CAB04722.1|  233|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U88169-12|AAB42231.1|  419|Caenorhabditis elegans Hypothetical p...    28   5.9  
AC006801-2|AAF60751.1|  914|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z81487-6|CAB03996.2|  872|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AL032626-17|CAA21536.1|  282|Caenorhabditis elegans Hypothetical...    27   7.7  

>L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical
           protein F44E2.3 protein.
          Length = 244

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
 Frame = +3

Query: 156 KRKLKSSKDHSRESKSDSTQEASSLSHNITHSN-----PYQMYIHIRKQIHHRQRGLFPV 320
           +RK +  +D  RE K D         H  + S      P+Q+    R++   R+R   P 
Sbjct: 18  ERKRREDRDRDRERKRDRKDRERKRRHRSSSSEGSQAEPHQLGSIFREERRRRERNESPK 77

Query: 321 KPKPP 335
            P PP
Sbjct: 78  LPPPP 82


>Z93380-3|CAB07600.1|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.4 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -3

Query: 564 SARPCTRKYFLFNCQHKLFFFNQMLYP*TMPFFLLSHKFILSFEVANCVVS 412
           S+ PC   +   +C+ +L+F+    Y  T   F L+   ++S+    C +S
Sbjct: 96  SSEPCRLPFHFTDCEVELYFYYLTNYFSTYSVFSLTFDRLISYFFPKCYIS 146


>Z81589-5|CAB04722.1|  233|Caenorhabditis elegans Hypothetical
           protein T08G5.9 protein.
          Length = 233

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 129 KTKLELHPRKRKLKSSKDHSRESKSDSTQEASSLSHNITHSN 254
           KT+   H RK K +S  +HSR      T  A+S      +SN
Sbjct: 4   KTQARRHKRKYKYRSKGNHSRSLLGMHTSPANSSMSQAIYSN 45


>U88169-12|AAB42231.1|  419|Caenorhabditis elegans Hypothetical
           protein T03F1.1 protein.
          Length = 419

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +3

Query: 147 HPRKRKLKSSKDHSRESKSDSTQEASSLSHNITHSNPYQMYIHIRK 284
           HP +    S   H  +S +   Q+   LS  +  SNPY   + +++
Sbjct: 27  HPLESSSNSKPTHQPKSPAPYRQKIEKLSAEVVDSNPYSRLMALQR 72


>AC006801-2|AAF60751.1|  914|Caenorhabditis elegans Hypothetical
            protein Y52D5A.1 protein.
          Length = 914

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
 Frame = +3

Query: 120  EQGKTKLELHPRKRKLKSSKDHSRESKSDSTQEASSLSHNITHSNPYQMYIHIRKQIHHR 299
            ++ K+K   H +K++L+ SK H    K+ +   + SLS  +  S   +  + +RK    R
Sbjct: 658  QKKKSKARSH-KKQQLQKSKQHGNNKKTKTKSTSGSLS--VDKSKESEKMLVVRKN-DSR 713

Query: 300  QRGLFPVKPKPPKDFNKYLMNRCTYTLQRNVNPEPQIEIP-HNLPPQMIK*IYDSGERKA 476
                    P+  KD      NR   T +  +N    IE+  H +  +  + +Y     K 
Sbjct: 714  TANYKEKAPEAVKDHEIPNANRIPGTTR--LNEPKNIEVTNHEVDDKTTERVYKKLREKK 771

Query: 477  SFT 485
              T
Sbjct: 772  KST 774


>Z81487-6|CAB03996.2|  872|Caenorhabditis elegans Hypothetical
           protein C54E10.1 protein.
          Length = 872

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 129 KTKLELHPRKRKLKSSKDHSRESKSDSTQEASSLSHNITHSN 254
           KT+   H RK K +S  +HSR      T   SS      +SN
Sbjct: 632 KTQARRHKRKYKYRSKGNHSRSLLGIHTSPTSSSMPQAIYSN 673


>AL032626-17|CAA21536.1|  282|Caenorhabditis elegans Hypothetical
           protein Y37D8A.21 protein.
          Length = 282

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = +3

Query: 126 GKTKLELHPRKR-----KLKSSKDHSRESKSDSTQEASSLSHNITHSNPYQMYIHIRKQI 290
           G  + EL+ RK+     +++S     R+ + DS ++  + + N  + + +Q     R   
Sbjct: 89  GTNQEELYKRKKGEIEERVRSVAAPDRDGRRDSYRDDRNRNRNGNNRDSWQQQQPPR--- 145

Query: 291 HHRQRGLFPVKPKPP 335
           HHRQ    P  P PP
Sbjct: 146 HHRQYDPLPPPPPPP 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,909,579
Number of Sequences: 27780
Number of extensions: 340590
Number of successful extensions: 1030
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)