Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0954
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68150.1 68414.m07785 WRKY family transcription factor simila...    31   0.77 
At1g54430.1 68414.m06209 hypothetical protein                          31   0.77 
At4g13130.1 68417.m02045 DC1 domain-containing protein contains ...    29   1.8  
At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT...    29   1.8  
At1g80710.1 68414.m09470 transducin family protein / WD-40 repea...    29   2.4  
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc...    28   4.1  
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc...    28   4.1  
At5g28760.1 68418.m03532 hypothetical protein contains Pfam prof...    27   7.2  
At5g39200.1 68418.m04747 hypothetical protein predicted proteins...    27   9.5  
At5g39170.1 68418.m04740 hypothetical protein                          27   9.5  
At5g39140.1 68418.m04735 hypothetical protein                          27   9.5  

>At1g68150.1 68414.m07785 WRKY family transcription factor similar
           to DNA-binding protein ABF2 GI:1159879 from [Avena
           fatua]
          Length = 374

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +3

Query: 135 KLELHPRKRKLKSSKDHSRESKSDSTQEAS 224
           KLE   +K++++ SK HSRE+K D   +AS
Sbjct: 34  KLEAEEKKKEIEGSK-HSRENKEDEEHDAS 62


>At1g54430.1 68414.m06209 hypothetical protein
          Length = 1639

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 210 TQEASSLSHNITHSN-PYQMYIHIRKQIHHRQRGLFPVKPKPPKDFNKYLMN 362
           T   + +  N+ H   P+   IH   Q HH+   L P + KPPK    Y+ +
Sbjct: 354 TSMGAQIDKNVMHKGGPFTFRIH--GQNHHKLGSLVPEEGKPPKILQLYIFD 403


>At4g13130.1 68417.m02045 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 767

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 347 IEIFWRFWFDWKQTTLTVMNLFPYMYVHLI 258
           I +F + ++DW+   + + +L+P M  HL+
Sbjct: 31  ISLFSQLFYDWRSVYMEIKSLYPKMEFHLL 60


>At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT1)
           identical to homeobox protein knotted-1 like 1  (KNAT1)
           SP:P46639 from [Arabidopsis thaliana]
          Length = 398

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 186 SRESKSDSTQEASSLSHNITHSNPYQMYIHIRKQIHHRQRGLFP 317
           S  +K+D+T + ++ ++N   SN    Y +     HH Q  LFP
Sbjct: 23  SSSNKNDNTSDTNNNNNNNNSSNYGPGYNNTNNNNHHHQHMLFP 66


>At1g80710.1 68414.m09470 transducin family protein / WD-40 repeat
           family protein contains 3 WD-40 repeats (PF00400);
           similar to damage-specific DNA-binding protein 2 (DDB2)
           [Mus musculus]
          Length = 516

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 22/76 (28%), Positives = 30/76 (39%)
 Frame = +3

Query: 297 RQRGLFPVKPKPPKDFNKYLMNRCTYTLQRNVNPEPQIEIPHNLPPQMIK*IYDSGERKA 476
           R RGL P     P  F+ + M      +  N  P PQ + P  L P   +  Y+      
Sbjct: 65  RTRGLNPDSAGLPDGFSDFRMGS---QITHN-QPSPQKQSPRLLAPIPFESAYEGYGSYT 120

Query: 477 SFTDTTSG*KRKACAG 524
              DT  G + K+C G
Sbjct: 121 QLVDTLLGIESKSCRG 136


>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to cyclophylin
           [Digitalis lanata] GI:1563719; contains Pfam profile
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type; contains AT-donor splice site at
           intron 9
          Length = 387

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 153 RKRKLKSSKDHSRESKSDSTQEASSLSHNITHSNPYQMYIHIRKQIHHRQRG 308
           RKR+  SS  +S  S SDS  E+ + S +   S+      H +++   R +G
Sbjct: 223 RKRRYSSSDSYSSSSDSDSDSESEAYSSSSYESSSSSDGKHRKRKSTTRHKG 274


>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to cyclophylin
           [Digitalis lanata] GI:1563719; contains Pfam profile
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type; contains AT-donor splice site at
           intron 9
          Length = 570

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 153 RKRKLKSSKDHSRESKSDSTQEASSLSHNITHSNPYQMYIHIRKQIHHRQRG 308
           RKR+  SS  +S  S SDS  E+ + S +   S+      H +++   R +G
Sbjct: 223 RKRRYSSSDSYSSSSDSDSDSESEAYSSSSYESSSSSDGKHRKRKSTTRHKG 274


>At5g28760.1 68418.m03532 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 520

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 129 KTKLELHPRKRKLKSSKDHSRESKSDSTQEASSLSHNITH 248
           +T+L    +K   K   DH   S+SD   E   +S N+ H
Sbjct: 346 RTRLIKEKKKIWWKDMFDHDVRSRSDQQMEEQHISENVPH 385


>At5g39200.1 68418.m04747 hypothetical protein predicted proteins -
           Arabidopsis thaliana
          Length = 201

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 359 ESLYIHPTKECQS*ATNRDTTQFA 430
           + + I PTK C S  +N  TT FA
Sbjct: 115 QQIPISPTKSCHSETSNNSTTSFA 138


>At5g39170.1 68418.m04740 hypothetical protein
          Length = 154

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 359 ESLYIHPTKECQS*ATNRDTTQFA 430
           + + I PTK C S  +N  TT FA
Sbjct: 66  QQIPISPTKSCHSETSNNSTTSFA 89


>At5g39140.1 68418.m04735 hypothetical protein 
          Length = 152

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 359 ESLYIHPTKECQS*ATNRDTTQFA 430
           + + I PTK C S  +N  TT FA
Sbjct: 66  QQIPISPTKSCHSETSNNSTTSFA 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,040,342
Number of Sequences: 28952
Number of extensions: 318985
Number of successful extensions: 889
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)