Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0953
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.03 |||microfibrillar-associated protein family protein|...    30   0.28 
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    27   2.0  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    27   2.6  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    26   6.0  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   7.9  

>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 546 ERLDGAGCLELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYRE 683
           ++ D    LEL+ E+ AIE+  L +  ER  Q L+D E  +R  ++
Sbjct: 205 KKRDKEKSLELEREKMAIEERRLMNSEEREAQDLKDAEASRRGKKK 250


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 258 ESDDLFKRLSRESEVRYTGYRDRPPEE 338
           + DD+FKRL ++ + R   YR R   E
Sbjct: 390 QEDDIFKRLKQQEDRRNENYRRRQQRE 416


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 308 HWIPRPASRRTPDAIHERLPRGTHRDSVYRYRHKPSACLRSLTLQQPWLRLSKGK 472
           H IP P  R++  A  ++    +  +  Y  RH+ S    S T  +  LR SKGK
Sbjct: 123 HEIPIPKKRKSKPAPKQKKSVASDDEDAYDKRHRFSINSASGTEIRTSLRSSKGK 177


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 251 GFLIGHYTWHFENESWLWL 195
           GF  G Y WHF +  WL+L
Sbjct: 246 GFECGIYYWHFCDVVWLFL 264


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 187 FTSSQSQDSFSKCHV*CPIKKPNSNQTISSKDLAEKVRSDTLDTETGLPK 336
           F++ +S++  S+ HV   +K P    T   +++  K  +DT    +G P+
Sbjct: 33  FSTEKSENEASESHVVDVVKDPFEQYTPEEQEILYKQINDTPAKLSGYPR 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,188
Number of Sequences: 5004
Number of extensions: 60951
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)