Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0953
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 29 2.7
07_03_0886 - 22293092-22293451,22294063-22294524 29 3.5
11_01_0382 - 2892887-2893161,2893593-2893717,2893801-2894013,289... 29 4.7
05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,375... 29 4.7
04_04_1485 + 33915978-33916412 29 4.7
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 29 4.7
11_04_0050 - 12819929-12820468,12820606-12820824,12820900-12821118 28 8.2
09_06_0348 + 22452219-22452360,22452791-22452912,22453342-224534... 28 8.2
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/61 (37%), Positives = 29/61 (47%)
Frame = -1
Query: 386 YLGVSLAATAHESHLAFFGRPVSVSSVSDLTFSAKSFEEIV*FEFGFLIGHYTWHFENES 207
Y GV L A A E L F P SV LT +S + F G LIG YTW +++
Sbjct: 31 YAGVGLIAEAMEMMLLSFVGP-SVQLEWKLTSHQESMITSIVF-VGMLIGAYTWGVVSDN 88
Query: 206 W 204
+
Sbjct: 89 Y 89
>07_03_0886 - 22293092-22293451,22294063-22294524
Length = 273
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Frame = +1
Query: 253 NSNQTISSKDLAEKVRSDTLDTETGLPKN-ARC-----DS*AVAARDTPR*RLPVPAQTF 414
+S T+ K E +R DTL T + + A C D+ A A RD PR P TF
Sbjct: 98 SSAWTVRQKAYVEALRLDTLFTPQAVVQGRAHCVGTEQDALAQAVRDAPRYPAPAMKVTF 157
Query: 415 SLSSITHPTTTVAATFKRKME 477
+ + + T + +ME
Sbjct: 158 QRPNPSTLQASFTGTLRSRME 178
>11_01_0382 -
2892887-2893161,2893593-2893717,2893801-2894013,
2894101-2895363,2895669-2895712
Length = 639
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -3
Query: 642 VDCTSRSDHVMLHLQSLLSPRPAQDSRRHRAVPDRSNLSILHKHRS 505
+ C+ D +LH LL P P R++P+ N+ ++ RS
Sbjct: 240 IPCSENMD--VLHKMQLLKPSPLDKKYVDRSIPNSENMDVVLMRRS 283
>05_01_0471 -
3751497-3751522,3751760-3751800,3752466-3752507,
3753249-3753310,3753398-3753584,3753692-3753826,
3753872-3753948,3754005-3754076,3754389-3754588,
3754675-3755020,3755463-3755519,3755655-3757433,
3757539-3757720,3757943-3758072
Length = 1111
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/65 (24%), Positives = 27/65 (41%)
Frame = +3
Query: 183 SIYEQPKPRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSG 362
SI ++ K F+ + V+ DQ + + D + ++ V + PEE Q
Sbjct: 334 SILQKLKELFVLRQQAVLSDQNLAYSNSDEYAPEETQANVSLSCPEQCAPEEPQANTTPS 393
Query: 363 CREGH 377
C E H
Sbjct: 394 CPELH 398
>04_04_1485 + 33915978-33916412
Length = 144
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 579 DEERAAIEDAALRDQIERYNQRLRDFE 659
DE I DA +R Q+ RY +LR+F+
Sbjct: 37 DETAREIVDAEVRRQVARYKHKLREFK 63
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/85 (23%), Positives = 34/85 (40%)
Frame = +3
Query: 129 VMHAMSDPSPLAGMLPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRY 308
+ H +P A + P P +FK+ + P +KA F +DL+ R R E +
Sbjct: 234 MFHGQKQSTPKAARAATEDSTFHPLPA-LFKLTGLSPFKKAAFTPEDLYSR-KRPLETKS 291
Query: 309 TGYRDRPPEERQMRFMSGCREGHTE 383
+ + E+ G + H E
Sbjct: 292 SAPATKLTTEKLRLSSDGNEDDHAE 316
>11_04_0050 - 12819929-12820468,12820606-12820824,12820900-12821118
Length = 325
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 600 EDAALRDQIERYNQRLRDFEDKQRAYRE 683
E AALR Q+E Y RL + E + ++ E
Sbjct: 109 EIAALRQQVEHYESRLSECEARMKSVEE 136
>09_06_0348 +
22452219-22452360,22452791-22452912,22453342-22453436,
22453691-22453844,22453952-22454014,22454329-22454478,
22454650-22454982,22455086-22455820
Length = 597
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 592 QRLKMQHYVIRSRGTINDYVILKTSSGHTANTG 690
++LK++ +I S D +ILK S+ H +TG
Sbjct: 108 KKLKIKRIIIGSSNKFMDEIILKCSNDHLEHTG 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,016,181
Number of Sequences: 37544
Number of extensions: 449218
Number of successful extensions: 1393
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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