BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0953 (698 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 29 2.7 07_03_0886 - 22293092-22293451,22294063-22294524 29 3.5 11_01_0382 - 2892887-2893161,2893593-2893717,2893801-2894013,289... 29 4.7 05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,375... 29 4.7 04_04_1485 + 33915978-33916412 29 4.7 02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 29 4.7 11_04_0050 - 12819929-12820468,12820606-12820824,12820900-12821118 28 8.2 09_06_0348 + 22452219-22452360,22452791-22452912,22453342-224534... 28 8.2 >04_04_1099 - 30886361-30886591,30886739-30886941,30887030-30887555, 30887751-30887988,30888592-30888695,30888784-30889059, 30889216-30889218 Length = 526 Score = 29.5 bits (63), Expect = 2.7 Identities = 23/61 (37%), Positives = 29/61 (47%) Frame = -1 Query: 386 YLGVSLAATAHESHLAFFGRPVSVSSVSDLTFSAKSFEEIV*FEFGFLIGHYTWHFENES 207 Y GV L A A E L F P SV LT +S + F G LIG YTW +++ Sbjct: 31 YAGVGLIAEAMEMMLLSFVGP-SVQLEWKLTSHQESMITSIVF-VGMLIGAYTWGVVSDN 88 Query: 206 W 204 + Sbjct: 89 Y 89 >07_03_0886 - 22293092-22293451,22294063-22294524 Length = 273 Score = 29.1 bits (62), Expect = 3.5 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Frame = +1 Query: 253 NSNQTISSKDLAEKVRSDTLDTETGLPKN-ARC-----DS*AVAARDTPR*RLPVPAQTF 414 +S T+ K E +R DTL T + + A C D+ A A RD PR P TF Sbjct: 98 SSAWTVRQKAYVEALRLDTLFTPQAVVQGRAHCVGTEQDALAQAVRDAPRYPAPAMKVTF 157 Query: 415 SLSSITHPTTTVAATFKRKME 477 + + + T + +ME Sbjct: 158 QRPNPSTLQASFTGTLRSRME 178 >11_01_0382 - 2892887-2893161,2893593-2893717,2893801-2894013, 2894101-2895363,2895669-2895712 Length = 639 Score = 28.7 bits (61), Expect = 4.7 Identities = 13/46 (28%), Positives = 22/46 (47%) Frame = -3 Query: 642 VDCTSRSDHVMLHLQSLLSPRPAQDSRRHRAVPDRSNLSILHKHRS 505 + C+ D +LH LL P P R++P+ N+ ++ RS Sbjct: 240 IPCSENMD--VLHKMQLLKPSPLDKKYVDRSIPNSENMDVVLMRRS 283 >05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507, 3753249-3753310,3753398-3753584,3753692-3753826, 3753872-3753948,3754005-3754076,3754389-3754588, 3754675-3755020,3755463-3755519,3755655-3757433, 3757539-3757720,3757943-3758072 Length = 1111 Score = 28.7 bits (61), Expect = 4.7 Identities = 16/65 (24%), Positives = 27/65 (41%) Frame = +3 Query: 183 SIYEQPKPRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSG 362 SI ++ K F+ + V+ DQ + + D + ++ V + PEE Q Sbjct: 334 SILQKLKELFVLRQQAVLSDQNLAYSNSDEYAPEETQANVSLSCPEQCAPEEPQANTTPS 393 Query: 363 CREGH 377 C E H Sbjct: 394 CPELH 398 >04_04_1485 + 33915978-33916412 Length = 144 Score = 28.7 bits (61), Expect = 4.7 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +3 Query: 579 DEERAAIEDAALRDQIERYNQRLRDFE 659 DE I DA +R Q+ RY +LR+F+ Sbjct: 37 DETAREIVDAEVRRQVARYKHKLREFK 63 >02_04_0056 + 19313422-19313967,19314035-19314168,19314263-19314398, 19314870-19314923,19314995-19315135,19315220-19315546, 19315647-19315916,19316080-19316226,19316890-19317045, 19317223-19317290,19318210-19318309,19318696-19318985, 19319074-19319274,19319840-19319902,19320263-19320356, 19320964-19321035,19321979-19322077,19322254-19322376 Length = 1006 Score = 28.7 bits (61), Expect = 4.7 Identities = 20/85 (23%), Positives = 34/85 (40%) Frame = +3 Query: 129 VMHAMSDPSPLAGMLPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRY 308 + H +P A + P P +FK+ + P +KA F +DL+ R R E + Sbjct: 234 MFHGQKQSTPKAARAATEDSTFHPLPA-LFKLTGLSPFKKAAFTPEDLYSR-KRPLETKS 291 Query: 309 TGYRDRPPEERQMRFMSGCREGHTE 383 + + E+ G + H E Sbjct: 292 SAPATKLTTEKLRLSSDGNEDDHAE 316 >11_04_0050 - 12819929-12820468,12820606-12820824,12820900-12821118 Length = 325 Score = 27.9 bits (59), Expect = 8.2 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +3 Query: 600 EDAALRDQIERYNQRLRDFEDKQRAYRE 683 E AALR Q+E Y RL + E + ++ E Sbjct: 109 EIAALRQQVEHYESRLSECEARMKSVEE 136 >09_06_0348 + 22452219-22452360,22452791-22452912,22453342-22453436, 22453691-22453844,22453952-22454014,22454329-22454478, 22454650-22454982,22455086-22455820 Length = 597 Score = 27.9 bits (59), Expect = 8.2 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +1 Query: 592 QRLKMQHYVIRSRGTINDYVILKTSSGHTANTG 690 ++LK++ +I S D +ILK S+ H +TG Sbjct: 108 KKLKIKRIIIGSSNKFMDEIILKCSNDHLEHTG 140 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,016,181 Number of Sequences: 37544 Number of extensions: 449218 Number of successful extensions: 1393 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1344 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1393 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1792053856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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