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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0953
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875...    29   2.7  
07_03_0886 - 22293092-22293451,22294063-22294524                       29   3.5  
11_01_0382 - 2892887-2893161,2893593-2893717,2893801-2894013,289...    29   4.7  
05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,375...    29   4.7  
04_04_1485 + 33915978-33916412                                         29   4.7  
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143...    29   4.7  
11_04_0050 - 12819929-12820468,12820606-12820824,12820900-12821118     28   8.2  
09_06_0348 + 22452219-22452360,22452791-22452912,22453342-224534...    28   8.2  

>04_04_1099 -
           30886361-30886591,30886739-30886941,30887030-30887555,
           30887751-30887988,30888592-30888695,30888784-30889059,
           30889216-30889218
          Length = 526

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 23/61 (37%), Positives = 29/61 (47%)
 Frame = -1

Query: 386 YLGVSLAATAHESHLAFFGRPVSVSSVSDLTFSAKSFEEIV*FEFGFLIGHYTWHFENES 207
           Y GV L A A E  L  F  P SV     LT   +S    + F  G LIG YTW   +++
Sbjct: 31  YAGVGLIAEAMEMMLLSFVGP-SVQLEWKLTSHQESMITSIVF-VGMLIGAYTWGVVSDN 88

Query: 206 W 204
           +
Sbjct: 89  Y 89


>07_03_0886 - 22293092-22293451,22294063-22294524
          Length = 273

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
 Frame = +1

Query: 253 NSNQTISSKDLAEKVRSDTLDTETGLPKN-ARC-----DS*AVAARDTPR*RLPVPAQTF 414
           +S  T+  K   E +R DTL T   + +  A C     D+ A A RD PR   P    TF
Sbjct: 98  SSAWTVRQKAYVEALRLDTLFTPQAVVQGRAHCVGTEQDALAQAVRDAPRYPAPAMKVTF 157

Query: 415 SLSSITHPTTTVAATFKRKME 477
              + +    +   T + +ME
Sbjct: 158 QRPNPSTLQASFTGTLRSRME 178


>11_01_0382 -
           2892887-2893161,2893593-2893717,2893801-2894013,
           2894101-2895363,2895669-2895712
          Length = 639

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 642 VDCTSRSDHVMLHLQSLLSPRPAQDSRRHRAVPDRSNLSILHKHRS 505
           + C+   D  +LH   LL P P       R++P+  N+ ++   RS
Sbjct: 240 IPCSENMD--VLHKMQLLKPSPLDKKYVDRSIPNSENMDVVLMRRS 283


>05_01_0471 -
           3751497-3751522,3751760-3751800,3752466-3752507,
           3753249-3753310,3753398-3753584,3753692-3753826,
           3753872-3753948,3754005-3754076,3754389-3754588,
           3754675-3755020,3755463-3755519,3755655-3757433,
           3757539-3757720,3757943-3758072
          Length = 1111

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/65 (24%), Positives = 27/65 (41%)
 Frame = +3

Query: 183 SIYEQPKPRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSG 362
           SI ++ K  F+ +   V+ DQ   + + D +     ++ V  +      PEE Q      
Sbjct: 334 SILQKLKELFVLRQQAVLSDQNLAYSNSDEYAPEETQANVSLSCPEQCAPEEPQANTTPS 393

Query: 363 CREGH 377
           C E H
Sbjct: 394 CPELH 398


>04_04_1485 + 33915978-33916412
          Length = 144

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 579 DEERAAIEDAALRDQIERYNQRLRDFE 659
           DE    I DA +R Q+ RY  +LR+F+
Sbjct: 37  DETAREIVDAEVRRQVARYKHKLREFK 63


>02_04_0056 +
           19313422-19313967,19314035-19314168,19314263-19314398,
           19314870-19314923,19314995-19315135,19315220-19315546,
           19315647-19315916,19316080-19316226,19316890-19317045,
           19317223-19317290,19318210-19318309,19318696-19318985,
           19319074-19319274,19319840-19319902,19320263-19320356,
           19320964-19321035,19321979-19322077,19322254-19322376
          Length = 1006

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/85 (23%), Positives = 34/85 (40%)
 Frame = +3

Query: 129 VMHAMSDPSPLAGMLPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRY 308
           + H     +P A     +     P P  +FK+  + P +KA F  +DL+ R  R  E + 
Sbjct: 234 MFHGQKQSTPKAARAATEDSTFHPLPA-LFKLTGLSPFKKAAFTPEDLYSR-KRPLETKS 291

Query: 309 TGYRDRPPEERQMRFMSGCREGHTE 383
           +    +   E+      G  + H E
Sbjct: 292 SAPATKLTTEKLRLSSDGNEDDHAE 316


>11_04_0050 - 12819929-12820468,12820606-12820824,12820900-12821118
          Length = 325

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 600 EDAALRDQIERYNQRLRDFEDKQRAYRE 683
           E AALR Q+E Y  RL + E + ++  E
Sbjct: 109 EIAALRQQVEHYESRLSECEARMKSVEE 136


>09_06_0348 +
           22452219-22452360,22452791-22452912,22453342-22453436,
           22453691-22453844,22453952-22454014,22454329-22454478,
           22454650-22454982,22455086-22455820
          Length = 597

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 592 QRLKMQHYVIRSRGTINDYVILKTSSGHTANTG 690
           ++LK++  +I S     D +ILK S+ H  +TG
Sbjct: 108 KKLKIKRIIIGSSNKFMDEIILKCSNDHLEHTG 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,016,181
Number of Sequences: 37544
Number of extensions: 449218
Number of successful extensions: 1393
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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