BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0953 (698 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_35520| Best HMM Match : CBF_beta (HMM E-Value=0) 180 8e-46 SB_40713| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09 SB_2992| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.096 SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22) 33 0.29 SB_26854| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1 SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 29 2.7 SB_9921| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6 SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004) 29 3.6 SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0) 29 4.8 SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 29 4.8 SB_15911| Best HMM Match : Sec7 (HMM E-Value=0) 29 4.8 SB_54230| Best HMM Match : EGF (HMM E-Value=0) 28 6.3 SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3 SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07) 28 6.3 SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4 >SB_35520| Best HMM Match : CBF_beta (HMM E-Value=0) Length = 174 Score = 180 bits (439), Expect = 8e-46 Identities = 82/161 (50%), Positives = 116/161 (72%), Gaps = 3/161 (1%) Frame = +3 Query: 222 MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGT 401 MPRVVP+QK KFE+D++F++L+RESE++YTGYRDR EER +RF + R+G + +A+ + Sbjct: 1 MPRVVPEQKQKFENDEMFRKLARESEIKYTGYRDRSHEERVVRFQTEIRDGQSNVAYVAS 60 Query: 402 GTNLQLVFDHSP---YNNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERLDGAGCL 572 GTNL L F + + DF +E GK HI S FI+NGVC+ ++GWIDL+RLDG G + Sbjct: 61 GTNLTLHFPKAEDGFIRSEFLDFDREPGKVHIKSHFILNGVCIIFKGWIDLQRLDGIGYI 120 Query: 573 ELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGGR 695 E DEE+A ED +R+ +E+ QRL +FE++QR +RE R Sbjct: 121 EYDEEKARKEDKIMRETLEQAKQRLAEFEERQRQWREEQQR 161 >SB_40713| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 39 Score = 60.1 bits (139), Expect = 2e-09 Identities = 24/37 (64%), Positives = 31/37 (83%) Frame = +3 Query: 483 HIVSRFIMNGVCVRWRGWIDLERLDGAGCLELDEERA 593 HI S FI+NGVC+ ++GWIDL+RLDG G +E DEE+A Sbjct: 2 HIKSHFILNGVCIIFKGWIDLQRLDGIGYIEYDEEKA 38 >SB_2992| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 41 Score = 34.3 bits (75), Expect = 0.096 Identities = 14/32 (43%), Positives = 22/32 (68%) Frame = +3 Query: 600 EDAALRDQIERYNQRLRDFEDKQRAYREHGGR 695 ED +R+ +E+ QRL +FE++QR +RE R Sbjct: 2 EDKIMRETLEQAKQRLAEFEERQRQWREEQQR 33 >SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22) Length = 649 Score = 32.7 bits (71), Expect = 0.29 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Frame = +1 Query: 100 PCKQSY---RSRRLCTL*VILRRWPACCLLT-LFTSSQSQDSFSKCHV*CPIKKPNSNQT 267 PCK+++ +R L L +++R+ ++ +FT+S +SKC V C + K ++ Sbjct: 346 PCKETFLPQNNRTLRVLLALVKRFSTIDIIAAIFTASTEWSGYSKCSVTCGVGKRTRSRQ 405 Query: 268 ISSKD 282 + +D Sbjct: 406 CNGRD 410 >SB_26854| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 132 Score = 29.9 bits (64), Expect = 2.1 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Frame = +3 Query: 429 HSPYNNRGCDFQKENGKAHIVS--RFIMNGVCVRWRGWIDLE 548 H PY +R E G H+V+ +F ++G + W ID++ Sbjct: 39 HLPYKSRWLYVGTEKGNVHVVNIEKFELSGYTINWNKAIDIK 80 >SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) Length = 897 Score = 29.5 bits (63), Expect = 2.7 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%) Frame = +3 Query: 201 KPRF----IFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCR 368 +PRF +PR+ + FE +FK S + + Y G +D+ R+ G R Sbjct: 315 QPRFKGTSYMSLPRLPRSARTSFELSIMFKASSGDGLLLYGGRKDK----RKDFLALGLR 370 Query: 369 EGHTEIAFT 395 GH E F+ Sbjct: 371 NGHVEFRFS 379 >SB_9921| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 530 Score = 29.1 bits (62), Expect = 3.6 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +3 Query: 567 CLELDEERAAIEDAALRDQIERYNQRLRDF 656 CL +EE A A R +ER+N+RL+ F Sbjct: 479 CLTKEEELATKRIAKARIHVERFNERLKKF 508 >SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004) Length = 969 Score = 29.1 bits (62), Expect = 3.6 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +3 Query: 579 DEERAAIEDAALRDQIERYNQRLRDFEDKQRAYRE 683 DEE ED R+ I+RY+Q+L D + K+ R+ Sbjct: 928 DEESGEDEDVLSRNAIKRYSQQLVDSKTKKHKTRK 962 >SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0) Length = 1075 Score = 28.7 bits (61), Expect = 4.8 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +3 Query: 246 KAKFESDDLFKRLSRESEVRYTGYRDRPPEERQM-RFMSGCREGHTEIAFTGT 401 KAK E D+F +++ E E++ G+R+ P ++ + + GC+ ++ T + Sbjct: 431 KAK-EGKDMFTKIAEEYEIQVLGWREIPYDDTSLGKTSKGCQPYMEQVFVTSS 482 >SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) Length = 5087 Score = 28.7 bits (61), Expect = 4.8 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%) Frame = +3 Query: 426 DHSPYNNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERLDGAGCLELDEERAAIED 605 +H + D E+ I++ + V V+ ++ ER DG C E+DEE+ E+ Sbjct: 2855 EHETHQKDSEDEHSEDEPGVIITGVFLEEVEVK--RLLEGEREDGPSCEEVDEEKDISEE 2912 Query: 606 AALRD-QIERYNQ-RLRDFED 662 L + +++R + D ED Sbjct: 2913 ELLEEVEVQRVEEGASHDLED 2933 >SB_15911| Best HMM Match : Sec7 (HMM E-Value=0) Length = 1220 Score = 28.7 bits (61), Expect = 4.8 Identities = 13/33 (39%), Positives = 24/33 (72%) Frame = -1 Query: 401 GTGKRYLGVSLAATAHESHLAFFGRPVSVSSVS 303 GTG + +G S +++AH +H + +PVSV++V+ Sbjct: 1178 GTGVKTMGASTSSSAHSTHNS---KPVSVAAVA 1207 >SB_54230| Best HMM Match : EGF (HMM E-Value=0) Length = 1359 Score = 28.3 bits (60), Expect = 6.3 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = -2 Query: 184 ESKGNMPANGEGSLIACITYGSYSFACTEPNIT*RACLTD 65 E K + P +G+ + TYGSYS AC +T + C TD Sbjct: 762 ECKPSNPCRNDGTCVN--TYGSYSCAC-PTGLTGKNCETD 798 >SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 766 Score = 28.3 bits (60), Expect = 6.3 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +2 Query: 323 PASRRTPDAIHERLPRGTHRDSVYRYRHKPSACLRSLTLQ 442 P RTP + +P G + S R+ +PS+ LRS+T + Sbjct: 557 PGDERTPPTSLKHVP-GDEQTSQVRFSSEPSSTLRSVTFK 595 >SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07) Length = 827 Score = 28.3 bits (60), Expect = 6.3 Identities = 19/73 (26%), Positives = 28/73 (38%) Frame = +3 Query: 99 SVQAKL*EP*VMHAMSDPSPLAGMLPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDLFK 278 S + L +P S+ A PF E P+P K+ + K F+ DDL Sbjct: 338 SDEKNLSKPESEQCSSEEESTAPKEPFYQTLEPPEPESPEKVSDPIQSSKQSFQKDDLLL 397 Query: 279 RLSRESEVRYTGY 317 + E+ GY Sbjct: 398 EDKPKEELNPEGY 410 >SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1352 Score = 27.9 bits (59), Expect = 8.4 Identities = 19/62 (30%), Positives = 26/62 (41%) Frame = +3 Query: 183 SIYEQPKPRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSG 362 SI + P P F + P Q+A+ E S++SE TGY R +RF Sbjct: 511 SIDDSPVPFDTFALDDEEP-QEAQQEKASEAAETSKQSEALSTGYSSAKTSSRPLRFYGN 569 Query: 363 CR 368 R Sbjct: 570 TR 571 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,537,885 Number of Sequences: 59808 Number of extensions: 502047 Number of successful extensions: 1479 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1322 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1477 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1829596184 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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