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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0953
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35520| Best HMM Match : CBF_beta (HMM E-Value=0)                   180   8e-46
SB_40713| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-09
SB_2992| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.096
SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22)                   33   0.29 
SB_26854| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 29   2.7  
SB_9921| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)         29   3.6  
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)                    29   4.8  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   29   4.8  
SB_15911| Best HMM Match : Sec7 (HMM E-Value=0)                        29   4.8  
SB_54230| Best HMM Match : EGF (HMM E-Value=0)                         28   6.3  
SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07)                  28   6.3  
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  

>SB_35520| Best HMM Match : CBF_beta (HMM E-Value=0)
          Length = 174

 Score =  180 bits (439), Expect = 8e-46
 Identities = 82/161 (50%), Positives = 116/161 (72%), Gaps = 3/161 (1%)
 Frame = +3

Query: 222 MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGT 401
           MPRVVP+QK KFE+D++F++L+RESE++YTGYRDR  EER +RF +  R+G + +A+  +
Sbjct: 1   MPRVVPEQKQKFENDEMFRKLARESEIKYTGYRDRSHEERVVRFQTEIRDGQSNVAYVAS 60

Query: 402 GTNLQLVFDHSP---YNNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERLDGAGCL 572
           GTNL L F  +      +   DF +E GK HI S FI+NGVC+ ++GWIDL+RLDG G +
Sbjct: 61  GTNLTLHFPKAEDGFIRSEFLDFDREPGKVHIKSHFILNGVCIIFKGWIDLQRLDGIGYI 120

Query: 573 ELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGGR 695
           E DEE+A  ED  +R+ +E+  QRL +FE++QR +RE   R
Sbjct: 121 EYDEEKARKEDKIMRETLEQAKQRLAEFEERQRQWREEQQR 161


>SB_40713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 39

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 24/37 (64%), Positives = 31/37 (83%)
 Frame = +3

Query: 483 HIVSRFIMNGVCVRWRGWIDLERLDGAGCLELDEERA 593
           HI S FI+NGVC+ ++GWIDL+RLDG G +E DEE+A
Sbjct: 2   HIKSHFILNGVCIIFKGWIDLQRLDGIGYIEYDEEKA 38


>SB_2992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 34.3 bits (75), Expect = 0.096
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 600 EDAALRDQIERYNQRLRDFEDKQRAYREHGGR 695
           ED  +R+ +E+  QRL +FE++QR +RE   R
Sbjct: 2   EDKIMRETLEQAKQRLAEFEERQRQWREEQQR 33


>SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22)
          Length = 649

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
 Frame = +1

Query: 100 PCKQSY---RSRRLCTL*VILRRWPACCLLT-LFTSSQSQDSFSKCHV*CPIKKPNSNQT 267
           PCK+++    +R L  L  +++R+    ++  +FT+S     +SKC V C + K   ++ 
Sbjct: 346 PCKETFLPQNNRTLRVLLALVKRFSTIDIIAAIFTASTEWSGYSKCSVTCGVGKRTRSRQ 405

Query: 268 ISSKD 282
            + +D
Sbjct: 406 CNGRD 410


>SB_26854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 429 HSPYNNRGCDFQKENGKAHIVS--RFIMNGVCVRWRGWIDLE 548
           H PY +R      E G  H+V+  +F ++G  + W   ID++
Sbjct: 39  HLPYKSRWLYVGTEKGNVHVVNIEKFELSGYTINWNKAIDIK 80


>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 897

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = +3

Query: 201 KPRF----IFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCR 368
           +PRF       +PR+    +  FE   +FK  S +  + Y G +D+    R+     G R
Sbjct: 315 QPRFKGTSYMSLPRLPRSARTSFELSIMFKASSGDGLLLYGGRKDK----RKDFLALGLR 370

Query: 369 EGHTEIAFT 395
            GH E  F+
Sbjct: 371 NGHVEFRFS 379


>SB_9921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 567 CLELDEERAAIEDAALRDQIERYNQRLRDF 656
           CL  +EE A    A  R  +ER+N+RL+ F
Sbjct: 479 CLTKEEELATKRIAKARIHVERFNERLKKF 508


>SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)
          Length = 969

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 579  DEERAAIEDAALRDQIERYNQRLRDFEDKQRAYRE 683
            DEE    ED   R+ I+RY+Q+L D + K+   R+
Sbjct: 928  DEESGEDEDVLSRNAIKRYSQQLVDSKTKKHKTRK 962


>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
          Length = 1075

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 246 KAKFESDDLFKRLSRESEVRYTGYRDRPPEERQM-RFMSGCREGHTEIAFTGT 401
           KAK E  D+F +++ E E++  G+R+ P ++  + +   GC+    ++  T +
Sbjct: 431 KAK-EGKDMFTKIAEEYEIQVLGWREIPYDDTSLGKTSKGCQPYMEQVFVTSS 482


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = +3

Query: 426  DHSPYNNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERLDGAGCLELDEERAAIED 605
            +H  +     D   E+    I++   +  V V+    ++ ER DG  C E+DEE+   E+
Sbjct: 2855 EHETHQKDSEDEHSEDEPGVIITGVFLEEVEVK--RLLEGEREDGPSCEEVDEEKDISEE 2912

Query: 606  AALRD-QIERYNQ-RLRDFED 662
              L + +++R  +    D ED
Sbjct: 2913 ELLEEVEVQRVEEGASHDLED 2933


>SB_15911| Best HMM Match : Sec7 (HMM E-Value=0)
          Length = 1220

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/33 (39%), Positives = 24/33 (72%)
 Frame = -1

Query: 401  GTGKRYLGVSLAATAHESHLAFFGRPVSVSSVS 303
            GTG + +G S +++AH +H +   +PVSV++V+
Sbjct: 1178 GTGVKTMGASTSSSAHSTHNS---KPVSVAAVA 1207


>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1359

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 184 ESKGNMPANGEGSLIACITYGSYSFACTEPNIT*RACLTD 65
           E K + P   +G+ +   TYGSYS AC    +T + C TD
Sbjct: 762 ECKPSNPCRNDGTCVN--TYGSYSCAC-PTGLTGKNCETD 798


>SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 323 PASRRTPDAIHERLPRGTHRDSVYRYRHKPSACLRSLTLQ 442
           P   RTP    + +P G  + S  R+  +PS+ LRS+T +
Sbjct: 557 PGDERTPPTSLKHVP-GDEQTSQVRFSSEPSSTLRSVTFK 595


>SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07)
          Length = 827

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/73 (26%), Positives = 28/73 (38%)
 Frame = +3

Query: 99  SVQAKL*EP*VMHAMSDPSPLAGMLPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDLFK 278
           S +  L +P      S+    A   PF    E P+P    K+   +   K  F+ DDL  
Sbjct: 338 SDEKNLSKPESEQCSSEEESTAPKEPFYQTLEPPEPESPEKVSDPIQSSKQSFQKDDLLL 397

Query: 279 RLSRESEVRYTGY 317
               + E+   GY
Sbjct: 398 EDKPKEELNPEGY 410


>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = +3

Query: 183 SIYEQPKPRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSG 362
           SI + P P   F +    P Q+A+ E        S++SE   TGY       R +RF   
Sbjct: 511 SIDDSPVPFDTFALDDEEP-QEAQQEKASEAAETSKQSEALSTGYSSAKTSSRPLRFYGN 569

Query: 363 CR 368
            R
Sbjct: 570 TR 571


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,537,885
Number of Sequences: 59808
Number of extensions: 502047
Number of successful extensions: 1479
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1477
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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