Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0953
(698 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT006862-1|AAP35508.1| 182|Homo sapiens core-binding factor, be... 187 4e-47
BC018509-1|AAH18509.1| 182|Homo sapiens core-binding factor, be... 187 4e-47
AF294326-1|AAG01553.1| 187|Homo sapiens core binding factor bet... 187 4e-47
L20298-1|AAA02868.1| 175|Homo sapiens transcription factor prot... 171 2e-42
AL445197-4|CAI15942.1| 166|Homo sapiens discoidin domain recept... 31 3.0
U00802-1|AAA16256.1| 649|Homo sapiens drebrin E2 protein. 31 5.2
D17530-1|BAA04480.1| 649|Homo sapiens drebrin E protein. 31 5.2
BC007567-1|AAH07567.1| 649|Homo sapiens drebrin 1 protein. 31 5.2
BC007281-1|AAH07281.1| 649|Homo sapiens drebrin 1 protein. 31 5.2
BC000283-1|AAH00283.1| 649|Homo sapiens drebrin 1 protein. 31 5.2
AL110225-1|CAB53683.1| 651|Homo sapiens hypothetical protein pr... 31 5.2
>BT006862-1|AAP35508.1| 182|Homo sapiens core-binding factor, beta
subunit protein.
Length = 182
Score = 187 bits (455), Expect = 4e-47
Identities = 85/162 (52%), Positives = 115/162 (70%), Gaps = 8/162 (4%)
Frame = +3
Query: 222 MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGT 401
MPRVVPDQ++KFE+++ F++LSRE E++YTG+RDRP EERQ RF + CR+G +EIAF T
Sbjct: 1 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVAT 60
Query: 402 GTNLQLVFDHSPY--------NNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERLD 557
GTNL L F + + + D ++E GK ++ + I+NGVCV W+GWIDL+RLD
Sbjct: 61 GTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLD 120
Query: 558 GAGCLELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYRE 683
G GCLE DEERA EDA + E +R R+FED+ R++RE
Sbjct: 121 GMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDRDRSHRE 162
>BC018509-1|AAH18509.1| 182|Homo sapiens core-binding factor, beta
subunit protein.
Length = 182
Score = 187 bits (455), Expect = 4e-47
Identities = 85/162 (52%), Positives = 115/162 (70%), Gaps = 8/162 (4%)
Frame = +3
Query: 222 MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGT 401
MPRVVPDQ++KFE+++ F++LSRE E++YTG+RDRP EERQ RF + CR+G +EIAF T
Sbjct: 1 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVAT 60
Query: 402 GTNLQLVFDHSPY--------NNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERLD 557
GTNL L F + + + D ++E GK ++ + I+NGVCV W+GWIDL+RLD
Sbjct: 61 GTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLD 120
Query: 558 GAGCLELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYRE 683
G GCLE DEERA EDA + E +R R+FED+ R++RE
Sbjct: 121 GMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDRDRSHRE 162
>AF294326-1|AAG01553.1| 187|Homo sapiens core binding factor beta
isoform PEBP2B protein.
Length = 187
Score = 187 bits (455), Expect = 4e-47
Identities = 85/162 (52%), Positives = 115/162 (70%), Gaps = 8/162 (4%)
Frame = +3
Query: 222 MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGT 401
MPRVVPDQ++KFE+++ F++LSRE E++YTG+RDRP EERQ RF + CR+G +EIAF T
Sbjct: 1 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVAT 60
Query: 402 GTNLQLVFDHSPY--------NNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERLD 557
GTNL L F + + + D ++E GK ++ + I+NGVCV W+GWIDL+RLD
Sbjct: 61 GTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLD 120
Query: 558 GAGCLELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYRE 683
G GCLE DEERA EDA + E +R R+FED+ R++RE
Sbjct: 121 GMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDRDRSHRE 162
>L20298-1|AAA02868.1| 175|Homo sapiens transcription factor
protein.
Length = 175
Score = 171 bits (417), Expect = 2e-42
Identities = 78/155 (50%), Positives = 107/155 (69%), Gaps = 8/155 (5%)
Frame = +3
Query: 243 QKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGTGTNLQLV 422
Q++KFE+++ F++LSRE E++YTG+RDRP EERQ RF + CR+G +EIAF TGTNL L
Sbjct: 1 QRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQ 60
Query: 423 FDHSPYNNRG--------CDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERLDGAGCLEL 578
F + + D ++E GK ++ + I+NGVCV W+GWIDL+RLDG GCLE
Sbjct: 61 FFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLDGMGCLEF 120
Query: 579 DEERAAIEDAALRDQIERYNQRLRDFEDKQRAYRE 683
DEERA EDA + E +R R+FED+ R++RE
Sbjct: 121 DEERAQQEDALAQQAFEEARRRTREFEDRDRSHRE 155
>AL445197-4|CAI15942.1| 166|Homo sapiens discoidin domain receptor
family, member 2 protein.
Length = 166
Score = 31.5 bits (68), Expect = 3.0
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +3
Query: 168 MLPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRP 329
+ P Y++P R I K+P P ++ E DD+ R+SRE + +G D P
Sbjct: 84 IFPLRPDYQEPS-RLIRKLPEFAPGEEESGE-DDVVGRVSREKPQQASGRYDTP 135
>U00802-1|AAA16256.1| 649|Homo sapiens drebrin E2 protein.
Length = 649
Score = 30.7 bits (66), Expect = 5.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 570 LELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYRE 683
L +EER D LR + ER Q ++ E+++R YRE
Sbjct: 190 LRKEEERKKALDERLRFEQERMEQERQEQEERERRYRE 227
>D17530-1|BAA04480.1| 649|Homo sapiens drebrin E protein.
Length = 649
Score = 30.7 bits (66), Expect = 5.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 570 LELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYRE 683
L +EER D LR + ER Q ++ E+++R YRE
Sbjct: 190 LRKEEERKKALDERLRFEQERMEQERQEQEERERRYRE 227
>BC007567-1|AAH07567.1| 649|Homo sapiens drebrin 1 protein.
Length = 649
Score = 30.7 bits (66), Expect = 5.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 570 LELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYRE 683
L +EER D LR + ER Q ++ E+++R YRE
Sbjct: 190 LRKEEERKKALDERLRFEQERMEQERQEQEERERRYRE 227
>BC007281-1|AAH07281.1| 649|Homo sapiens drebrin 1 protein.
Length = 649
Score = 30.7 bits (66), Expect = 5.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 570 LELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYRE 683
L +EER D LR + ER Q ++ E+++R YRE
Sbjct: 190 LRKEEERKKALDERLRFEQERMEQERQEQEERERRYRE 227
>BC000283-1|AAH00283.1| 649|Homo sapiens drebrin 1 protein.
Length = 649
Score = 30.7 bits (66), Expect = 5.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 570 LELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYRE 683
L +EER D LR + ER Q ++ E+++R YRE
Sbjct: 190 LRKEEERKKALDERLRFEQERMEQERQEQEERERRYRE 227
>AL110225-1|CAB53683.1| 651|Homo sapiens hypothetical protein
protein.
Length = 651
Score = 30.7 bits (66), Expect = 5.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 570 LELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYRE 683
L +EER D LR + ER Q ++ E+++R YRE
Sbjct: 192 LRKEEERKKALDERLRFEQERMEQERQEQEERERRYRE 229
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,032,999
Number of Sequences: 237096
Number of extensions: 2240769
Number of successful extensions: 10118
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10113
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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