Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0953
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69793-4|CAA93675.3|  382|Caenorhabditis elegans Hypothetical pr...    34   0.085
U64840-7|AAB04965.1|  340|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U53141-4|AAA96106.1|  528|Caenorhabditis elegans Mutator protein...    31   1.0  
U40942-9|AAC47074.6|  703|Caenorhabditis elegans Synaptogenesis ...    29   3.2  

>Z69793-4|CAA93675.3|  382|Caenorhabditis elegans Hypothetical
           protein R03A10.5 protein.
          Length = 382

 Score = 34.3 bits (75), Expect = 0.085
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 474 GKAHIVSRFIMNGVCVRWRGWIDLERLDGAGCLELDEERAA 596
           GK H+V++FI  G  +RW  W+   R  G G    DEE+ A
Sbjct: 286 GKIHVVTKFIKAGRKLRW--WVRGNRNFGLGVFHSDEEQVA 324


>U64840-7|AAB04965.1|  340|Caenorhabditis elegans Hypothetical
           protein ZC317.1 protein.
          Length = 340

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = -1

Query: 605 IFNRCSLLVQLKTAGAIEPFQIDPTSPSYTNTVHDESGYDVSFSIFLLKVAATVVVG*VI 426
           +FNRC L++ L+    +EP +         N    +   D++F   + K+ AT+  G V 
Sbjct: 86  LFNRCELILGLQCMDNVEPIRDIKIDKLVANHPFTKGQCDIAFCT-IGKLKATIECGDVC 144

Query: 425 EDKLK 411
            D LK
Sbjct: 145 LDNLK 149


>U53141-4|AAA96106.1|  528|Caenorhabditis elegans Mutator protein 14
           protein.
          Length = 528

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = -1

Query: 605 IFNRCSLLVQLKTAGAIEPFQIDPTSPSYTNTVHDESGYDVSFSIFLLKVAATVVVG*VI 426
           +FNRC L++ L+    +EP +         N    +   D++F   + K+ AT+  G V 
Sbjct: 186 LFNRCELILGLQCMDNVEPIRDIKIDKLVANHPFTKGQCDIAFCT-IGKLKATIECGDVC 244

Query: 425 EDKLK 411
            D LK
Sbjct: 245 LDNLK 249


>U40942-9|AAC47074.6|  703|Caenorhabditis elegans Synaptogenesis
           abnormal protein 1 protein.
          Length = 703

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 238 GTTRGILKMNLGFGCS*IESKGNMPAN-GEGSLIACIT 128
           GTTRG +K+N+ FG   + +  +   N G+ +   C T
Sbjct: 343 GTTRGSIKLNVAFGARIMSTSQDKEVNEGDNAFFHCAT 380


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,223,144
Number of Sequences: 27780
Number of extensions: 359040
Number of successful extensions: 1100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)