Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0953
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05890.1 68414.m00617 zinc finger protein-related contains lo...    30   1.3  
At5g43660.1 68418.m05336 expressed protein similar to unknown pr...    29   2.2  
At3g60910.1 68416.m06814 expressed protein low similarity to PIR...    28   5.2  
At2g31830.1 68415.m03887 endonuclease/exonuclease/phosphatase fa...    28   5.2  
At5g50100.1 68418.m06204 expressed protein contains Pfam domain ...    28   6.8  
At2g39320.1 68415.m04827 OTU-like cysteine protease family prote...    28   6.8  
At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein si...    27   9.0  

>At1g05890.1 68414.m00617 zinc finger protein-related contains low
           similarity to zinc finger proteins and Pfam PF01485: IBR
           domain
          Length = 552

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +3

Query: 525 WRGWIDLERLDGAGCLELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYR 680
           W G+I     DG GCL L     +   A  RD I+    +L   EDK++ YR
Sbjct: 158 WTGYISTTINDGPGCLMLKCPDPSCPAAIGRDMID----KLASKEDKEKYYR 205


>At5g43660.1 68418.m05336 expressed protein similar to unknown
           protein (gb|AAB72163.1)
          Length = 361

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 240 DQKAKFESDDLFKRLSRE---SEVRYTGYRDRPPEERQMRF 353
           ++KAKF SD L K +SRE     +R+  YR+      Q RF
Sbjct: 48  EEKAKFMSDILHKYISREECAKAIRFKNYREWIMSNYQPRF 88


>At3g60910.1 68416.m06814 expressed protein low similarity to
           PIR|I46078 endothelin converting enzyme from Bos
           primigenius taurus
          Length = 252

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 150 PSPLAGMLPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDLFK 278
           P    GMLP D + E P   FI+   +   D++A+  S  L +
Sbjct: 207 PITSEGMLPHDYVLEDPDSHFIYICKKKDEDEEAQLPSYPLME 249


>At2g31830.1 68415.m03887 endonuclease/exonuclease/phosphatase
           family protein belongs to Pfam:PF03372:
           Endonuclease/Exonuclease/phosphatase family; contains 4
           WD-40 repeats (PF00400);similar to SP:Q01968 Inositol
           polyphosphate 5-phosphatase OCRL-1 (EC 3.1.3.-)(Lowe's
           oculocerebrorenal syndrome protein) (SP:Q01968) [Homo
           sapiens]
          Length = 1144

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +1

Query: 535 GSIWNGSMAPAVLSWTRREQRLK-MQHY--VIRSRGTINDYVILKTSSGH 675
           GSIW GSM   +  W     RL+ + H+   +    T  D + +  SSG+
Sbjct: 459 GSIWTGSMNGVIAQWDGNGSRLREVNHHQQAVLCFCTFGDRIYVGYSSGY 508


>At5g50100.1 68418.m06204 expressed protein contains Pfam domain
           PF04134: Protein of unknown function, DUF393
          Length = 214

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 321 DRPPEERQMRFMSGCREGHTEIAFTGTGTNLQLVFDHSPYNNRGCDFQKENGKAHIV 491
           D P   R++  +    E H  I F    +N     D+SP +N+G D++   G+ H +
Sbjct: 82  DCPLCMREVNMLMERNEKHGTIKFVDISSN-----DYSPEDNQGLDYKTVMGQIHAI 133


>At2g39320.1 68415.m04827 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 189

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 323 PASRRTPD-AIHERLPRGTHRDSVYRYRHKPSACLRSLTLQQPWLRLSKGK 472
           P S++ PD  IH     G H +S+Y+   +  +   S +    W++L + K
Sbjct: 77  PKSQKEPDKVIHMSYLAGIHFNSIYKKNKEKGSRSSSSSSSAVWMKLQRKK 127


>At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein
           similar to alpha-glucosidase II from SP:Q9F234 [Bacillus
           thermoamyloliquefaciens]; contains Pfam profile: PF01055
           Glycosyl hydrolases family 31
          Length = 991

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 534 WIDLERLDGAGCLELDEERAAIEDAALRD 620
           W+D++ +DG  C   D+ER     A  +D
Sbjct: 233 WMDIDYMDGFRCFTFDKERFPDPSALAKD 261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,440,615
Number of Sequences: 28952
Number of extensions: 338731
Number of successful extensions: 982
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)