Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0952
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    29   0.64 
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    28   1.5  
SPBC725.02 |mpr1|spy1|response regulator phosphotransferase |Sch...    28   1.5  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    27   2.6  
SPBC17D11.03c |||conserved fungal protein|Schizosaccharomyces po...    26   5.9  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   7.8  

>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 84  YAFPAAVYVHSHRDPHRSLTMQSISSSLKETMNPKDIMTDAFHNFHPQYQQYT 242
           + F + V + S      ++T++ I     E   P D +TDA  N+H   ++ T
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKMLFSEASIPIDELTDALKNYHENLEEPT 532


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +1

Query: 517 NIWLWNSPLFSVNFLNTKLN 576
           NIWL NSPL SV+ L   LN
Sbjct: 493 NIWLVNSPLSSVHQLREALN 512


>SPBC725.02 |mpr1|spy1|response regulator phosphotransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 330 LGRRARSQSRSFLPHAYRI 274
           +  RARS S S +PHAYR+
Sbjct: 41  IAERARSPSGSAIPHAYRV 59


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/72 (25%), Positives = 29/72 (40%)
 Frame = +3

Query: 33  QNFLICIEMCAAAVALRYAFPAAVYVHSHRDPHRSLTMQSISSSLKETMNPKDIMTDAFH 212
           QN L+C+EM   A++  YAF    Y         S     +  + K+ +  KD+  D+  
Sbjct: 245 QNVLMCLEMPFFALSHWYAFRIEDY---DTPTWLSCARLPLLKAFKDVIGLKDVWCDSLQ 301

Query: 213 NFHPQYQQYTQY 248
             H     Y  +
Sbjct: 302 TLHGDRYVYQNF 313


>SPBC17D11.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 213

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 672 QCLKGMLIKNKLFFVDLVFYFACKKPTK 589
           Q   G+L    L+ V +V Y AC +P K
Sbjct: 8   QRFNGLLEPTHLYIVSVVAYSACNRPDK 35


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 51  IEMCAAAVALRYAFPAAVYVHSHRDPHRSLTMQSI 155
           ++ C      R    A  Y H HR  HR L +++I
Sbjct: 117 LDECTTRKIFRQIVHAIDYCHLHRVAHRDLKLENI 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,715
Number of Sequences: 5004
Number of extensions: 46205
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)