Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0952
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0530 - 34545699-34546013,34546121-34546354,34547006-345470... 45 7e-05
02_05_0173 + 26475074-26476108 42 5e-04
03_04_0019 + 16500877-16501029,16501184-16501240,16501560-165016... 37 0.013
06_03_1475 - 30391555-30391890,30391982-30392233,30392358-303926... 33 0.16
07_01_0961 + 8070992-8071015,8071016-8071089,8073051-8073200,807... 33 0.22
04_04_0803 - 28165828-28166136,28166257-28166505,28166628-281668... 32 0.50
04_04_0702 + 27383876-27384862 31 1.2
12_02_0010 - 12275652-12276221,12276804-12276935 30 1.5
05_06_0083 + 25429958-25429967,25431035-25431144,25431286-254313... 30 2.0
12_02_0591 + 20864861-20867329 29 3.5
08_02_1144 + 24670224-24670607,24670723-24670928,24671211-246713... 29 3.5
08_01_1037 - 10536547-10536585,10536814-10537102,10537202-105373... 29 3.5
05_03_0240 + 10813886-10814060,10814164-10814275,10814901-108150... 29 3.5
09_02_0516 - 10136400-10136516,10136606-10136894,10137578-101381... 29 4.7
07_01_0551 - 4105721-4105774,4106090-4106159,4106880-4106945,410... 29 4.7
03_05_0415 - 24019330-24019539,24020948-24021099,24021765-240218... 28 6.2
01_05_0627 + 23802235-23802853,23803357-23803430,23804207-238043... 28 6.2
10_05_0046 + 8516043-8516425,8517908-8518019,8518276-8518377,851... 28 8.1
01_06_1384 + 36888265-36889577,36889683-36889908 28 8.1
01_02_0081 + 10943368-10943787 28 8.1
>03_06_0530 -
34545699-34546013,34546121-34546354,34547006-34547078,
34548226-34548299,34548852-34549004
Length = 282
Score = 44.8 bits (101), Expect = 7e-05
Identities = 24/77 (31%), Positives = 34/77 (44%)
Frame = +3
Query: 21 SAGYQNFLICIEMCAAAVALRYAFPAAVYVHSHRDPHRSLTMQSISSSLKETMNPKDIMT 200
+A QNF++C+EM AA+ +AFP Y + P SL + D
Sbjct: 119 AADLQNFVLCVEMLIAAIGHLFAFPYNEYAGPNGRP-----SGDFKGSLLHALKFNDFYH 173
Query: 201 DAFHNFHPQYQQYTQYS 251
D H F P Y +Y Y+
Sbjct: 174 DTVHQFAPTYNEYVLYN 190
>02_05_0173 + 26475074-26476108
Length = 344
Score = 41.9 bits (94), Expect = 5e-04
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 262 AVTRNPVSVGKEGAA-LAPRPPPQRVATICHATNYHEKTTLLSSDDEFQ*INEDKSHVKL 438
A+ P VG GA LAP PPP T H +T ++D + + I E VK
Sbjct: 207 AILNFPNEVGSRGADFLAPPPPPPPPTTSTHGKRKRHETA--AADPDVEVIGESSKSVKT 264
Query: 439 ETYRSPNS 462
ETY SP S
Sbjct: 265 ETYTSPAS 272
>03_04_0019 +
16500877-16501029,16501184-16501240,16501560-16501668,
16501837-16502021,16502103-16502182,16502869-16503085,
16503394-16503633,16503720-16504028
Length = 449
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +3
Query: 12 GTVSAGYQNFLICIEMCAAAVALRYAFPAAVYVHSHRDPHRSLTMQSISSSLK 170
G V Q+FLICIEM AAVA + F Y H H +T + +K
Sbjct: 253 GKVQNAIQDFLICIEMAIAAVAHAFVFNVEPYQHIPVVEHGEITSEESKLEVK 305
>06_03_1475 -
30391555-30391890,30391982-30392233,30392358-30392619,
30393232-30393320,30393408-30393592,30393673-30393781,
30393886-30393942,30394047-30394196
Length = 479
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 33 QNFLICIEMCAAAVALRYAFPAAVY 107
Q+F+ICIEM A++A Y FPA Y
Sbjct: 277 QDFIICIEMGVASIAHLYVFPAKPY 301
>07_01_0961 +
8070992-8071015,8071016-8071089,8073051-8073200,
8073307-8073592,8074077-8074220,8074357-8074665
Length = 328
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/72 (29%), Positives = 29/72 (40%)
Frame = +3
Query: 39 FLICIEMCAAAVALRYAFPAAVYVHSHRDPHRSLTMQSISSSLKETMNPKDIMTDAFHNF 218
FL +M AA+ ++AF Y S+ P SL + D D H F
Sbjct: 173 FLTYWQMLIAAIGHQFAFSYKEYAGSNARP-----FGGFRGSLFHALKFNDFYHDTVHQF 227
Query: 219 HPQYQQYTQYSS 254
P Y +Y YS+
Sbjct: 228 APTYHEYVLYSN 239
>04_04_0803 -
28165828-28166136,28166257-28166505,28166628-28166889,
28168116-28168204,28168286-28168342,28168443-28168595
Length = 372
Score = 31.9 bits (69), Expect = 0.50
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 18 VSAGYQNFLICIEMCAAAVALRYAFPAAVY 107
+ + Q+F+ICIEM A++ Y FPA Y
Sbjct: 175 LKSSIQDFIICIEMGIASIVHLYVFPAKPY 204
>04_04_0702 + 27383876-27384862
Length = 328
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +1
Query: 262 AVTRNPVSVGKEGAAL-APRPPPQRVATICHATNYHEKTTLLSSDDEFQ*INEDKSHVKL 438
A+ P VG GA L AP PPP + TN ++ DD + I VK
Sbjct: 191 AILNFPNEVGTRGAELWAPPPPPPAHSAAASTTNKRKRQPSEDPDDGVEVIGVVSKAVKT 250
Query: 439 ETYRSPNS 462
E S +S
Sbjct: 251 EAPTSNSS 258
>12_02_0010 - 12275652-12276221,12276804-12276935
Length = 233
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -2
Query: 327 GRRARSQSRSFLPHAYRIPCDRALRSCTGCTAGTADGSCGRRPS 196
GRR SQ + A R PCD L+ CT AD + RRP+
Sbjct: 67 GRRVSSQLQPKEKEAVRSPCDVILQ-CTTVGYSAADKAAPRRPT 109
>05_06_0083 +
25429958-25429967,25431035-25431144,25431286-25431342,
25431828-25431936,25432329-25432513,25432595-25432683,
25432877-25433132,25433623-25433865,25433955-25434266
Length = 456
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 33 QNFLICIEMCAAAVALRYAFPAAVYVHSHRDPHRSLTMQSISS 161
Q+++IC+EM AAV FPA Y R M +S
Sbjct: 265 QDYIICLEMGVAAVVHLKVFPAKPYRRGERSVSNVAVMSDYAS 307
>12_02_0591 + 20864861-20867329
Length = 822
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -2
Query: 408 SLKFVIGAEQRRLLVVIGGVADGSDALGRRARSQSRSFLP-HAYRIPCDRALRSCTGCTA 232
S +FV + + GG G+ +GRR S SFL H R+ L S T C A
Sbjct: 180 SFRFVFHLDDGKAAADAGGGGGGAPRMGRRRWRISWSFLSRHVGRVFYWLQLASATACVA 239
Query: 231 GTA 223
+A
Sbjct: 240 VSA 242
>08_02_1144 +
24670224-24670607,24670723-24670928,24671211-24671310,
24671539-24672864
Length = 671
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -2
Query: 384 EQRRLLVVIG-GVADGSDALGRRARSQSRSFLPHAYRIPCDRALRSCTGCTAGTA 223
E+RR LVV G G DG +A G AR S LP A + L C+A ++
Sbjct: 54 EKRRRLVVAGDGEGDGGEASGSAARGLVES-LPEALLVEVVVRLELEAACSAASS 107
>08_01_1037 -
10536547-10536585,10536814-10537102,10537202-10537327,
10537336-10538291,10538379-10538825,10538904-10539632
Length = 861
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 200 GRLPQLPSAVPAVHPVQLRNARSHGIR 280
GRLP+ P+ P+ P Q R+A+S+ ++
Sbjct: 491 GRLPKRPTPAPSAPPAQDRHAQSYDVQ 517
>05_03_0240 +
10813886-10814060,10814164-10814275,10814901-10815077,
10815287-10815413,10815529-10815642
Length = 234
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/60 (25%), Positives = 24/60 (40%)
Frame = +3
Query: 51 IEMCAAAVALRYAFPAAVYVHSHRDPHRSLTMQSISSSLKETMNPKDIMTDAFHNFHPQY 230
+ A RY+ P +V H D R+L + + +T P+ + T H H Y
Sbjct: 145 VHKAVIASGARYSGPTVHFVDEHYDTGRTLAQRVVPVQANDT--PEQLATRVLHEEHQVY 202
>09_02_0516 -
10136400-10136516,10136606-10136894,10137578-10138110,
10138719-10138892,10138898-10138903
Length = 372
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +2
Query: 200 GRLPQLPSAVPAVHPVQLRNARSHGIR*AWGRKERLWLLARRPSASLPSATPPITTRRRR 379
GR P+ PS+ P+ P Q R+A+S+ ++ + W + PP+ R+
Sbjct: 159 GRPPKRPSSSPSAPPAQDRHAQSYDVQLKYDTD--FWEDRTEADSKAIHEPPPMKKSRKA 216
Query: 380 CSAP 391
S+P
Sbjct: 217 HSSP 220
>07_01_0551 -
4105721-4105774,4106090-4106159,4106880-4106945,
4106985-4107479,4107491-4107672,4107728-4108222
Length = 453
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 289 GKEGAALAPRPPPQRVATICHATNYHEKTTLLSSDDE 399
G+E A P PPP+R+AT C + H +L+ D E
Sbjct: 245 GEESVAQPPVPPPRRIAT-CSSEEIH-LPSLVELDSE 279
>03_05_0415 -
24019330-24019539,24020948-24021099,24021765-24021846,
24021930-24022068,24022775-24023127
Length = 311
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = -2
Query: 327 GRRARSQSRSFLPHAYRIPCDRALRSCTGCTAGTADGSCGRRPSLCPW 184
GRR R + LP + C R A T+ + RP+ PW
Sbjct: 26 GRRPRLRFPLPLPRGGHLRCSAGYREAAAAAASTSSTTTTPRPTEIPW 73
>01_05_0627 +
23802235-23802853,23803357-23803430,23804207-23804364,
23804640-23804964
Length = 391
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 271 RNPVSVGKEGAALAPRPPPQRVA 339
R P SV E A+APRPPP A
Sbjct: 149 RRPRSVRAEVVAIAPRPPPAEPA 171
>10_05_0046 +
8516043-8516425,8517908-8518019,8518276-8518377,
8518605-8518657,8518976-8519062,8519162-8519830,
8520154-8520214,8520295-8520342
Length = 504
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 318 ARSQSRSFLPHAYRIPCDRALRSCTGCTAGTADG 217
A+S +R+ P ++PC + R T C++ T G
Sbjct: 282 AKSHTRAPAPEPKQLPCRTSCRRATNCSSKTVAG 315
>01_06_1384 + 36888265-36889577,36889683-36889908
Length = 512
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -1
Query: 226 CGWKLWKASVIMSLGFIVSLRLLEIDCMVRERCGSRCECTYTAAGNAYRSATAAAHISM 50
CGW S+G +SLR+L+ +++ G E AG + R A A SM
Sbjct: 109 CGWPASVERSASSVGLPLSLRMLKRKKQQQQQQGRWDERLIDCAGESARGAVGRAFSSM 167
>01_02_0081 + 10943368-10943787
Length = 139
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -2
Query: 270 CDRALRSCTGCTAGTADGSCGRRPSLC 190
C R C GC G CGR P +C
Sbjct: 76 CRRHGGGCDGCGRGGGCDGCGRYPPMC 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,660,934
Number of Sequences: 37544
Number of extensions: 321166
Number of successful extensions: 1384
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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