Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0952
(697 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57936| Best HMM Match : No HMM Matches (HMM E-Value=.) 95 4e-20
SB_55171| Best HMM Match : DUF300 (HMM E-Value=4.1e-13) 95 4e-20
SB_13457| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_34680| Best HMM Match : WD40 (HMM E-Value=4.5e-07) 33 0.29
SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21) 31 1.2
SB_38415| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_7693| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09) 28 6.3
SB_56133| Best HMM Match : FecCD (HMM E-Value=0) 28 8.3
SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_30920| Best HMM Match : DUP (HMM E-Value=4.6) 28 8.3
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_57936| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 95.5 bits (227), Expect = 4e-20
Identities = 42/80 (52%), Positives = 58/80 (72%), Gaps = 2/80 (2%)
Frame = +3
Query: 6 TAGTVSAGYQNFLICIEMCAAAVALRYAFPAAVYVHSHR--DPHRSLTMQSISSSLKETM 179
+AGT++AGYQNF++CIEM AA+ALRYAFP Y+ + + + ++SIS +LK+TM
Sbjct: 20 SAGTIAAGYQNFIVCIEMFFAAIALRYAFPYMTYLSQRKLNQQGQGIALKSISKNLKQTM 79
Query: 180 NPKDIMTDAFHNFHPQYQQY 239
NP+DI+ DA HNF YQ Y
Sbjct: 80 NPRDIVDDAIHNFSRSYQHY 99
>SB_55171| Best HMM Match : DUF300 (HMM E-Value=4.1e-13)
Length = 254
Score = 95.5 bits (227), Expect = 4e-20
Identities = 42/80 (52%), Positives = 58/80 (72%), Gaps = 2/80 (2%)
Frame = +3
Query: 6 TAGTVSAGYQNFLICIEMCAAAVALRYAFPAAVYVHSHR--DPHRSLTMQSISSSLKETM 179
+AGT++AGYQNF++CIEM AA+ALRYAFP Y+ + + + ++SIS +LK+TM
Sbjct: 77 SAGTIAAGYQNFIVCIEMFFAAIALRYAFPYMTYLSQRKLNQQGQGIALKSISKNLKQTM 136
Query: 180 NPKDIMTDAFHNFHPQYQQY 239
NP+DI+ DA HNF YQ Y
Sbjct: 137 NPRDIVDDAIHNFSRSYQHY 156
>SB_13457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 6 TAGTVSAGYQNFLICIEMCAAAVALRYAFPAAVYVHSHRDP 128
T V+ G Q+F+ICIEM AVA Y F Y+ + P
Sbjct: 39 TVEDVANGIQSFIICIEMLLFAVAHYYVFSYKPYLDTSSPP 79
>SB_34680| Best HMM Match : WD40 (HMM E-Value=4.5e-07)
Length = 454
Score = 32.7 bits (71), Expect = 0.29
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -1
Query: 178 IVSLRLLEIDCMVRERC-GSRCECTYTAAGNAYRSATAAAHISMQIRKFW*PADTVP 11
++ + LEI C++R+RC G++C C + YR+ A + + W DT P
Sbjct: 255 VLKAKTLEIVCVLRKRCRGNKCWCVFNP---RYRNGVLACCLQDGRIEIWTREDTAP 308
>SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21)
Length = 1405
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 324 RRARSQSRSFLPHAYRIPCDRALRSCTGCTAGTADGSCGRRPSL 193
RR R +SRS PH + DR + GT+ +C RPS+
Sbjct: 1272 RRQRHRSRSCTPHVHAAHADRQNVTSLRLLNGTSPNTCLGRPSV 1315
>SB_38415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 837
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 84 YAFPAAV--YVHSHRDPHRSLTMQSISSSLKETMNPKDIMTDAFHNFHPQYQ 233
Y+ PA + YVHS + H +++I S+ ++ +AF+N PQYQ
Sbjct: 677 YSKPANIPQYVHS-KSNHPPNIIRNIPDSINRRLSEISYDEEAFNNAAPQYQ 727
>SB_7693| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09)
Length = 688
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 319 PPPQRVATICHATNYHEKTTLLS 387
PPPQRVA++ N+ K T LS
Sbjct: 317 PPPQRVASVSSPKNFIVKATTLS 339
>SB_56133| Best HMM Match : FecCD (HMM E-Value=0)
Length = 357
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -2
Query: 429 MGLIFVYSLKFVIGAEQRRLLVV 361
+GLI + +F++GAE RRLL V
Sbjct: 217 VGLILPHVARFLVGAEHRRLLPV 239
>SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 857
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 33 QNFLICIEMCAAAVALRYAFPAAVYVHSH 119
+N L ++ C ++L YAF + ++HSH
Sbjct: 143 RNILTAMQSCFDHISLDYAFQLSKFMHSH 171
>SB_30920| Best HMM Match : DUP (HMM E-Value=4.6)
Length = 404
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 155 LQQPQGDNESQGHNDGRLPQLPSAVPAV 238
L + +G SQGHN + + P+A+P V
Sbjct: 286 LPRREGPRPSQGHNPAGILRCPTAIPGV 313
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 19 CRPATRTS*SASRCAPRRWRC 81
C P T+ + RC PRRW C
Sbjct: 626 CNPDTQFRCTNGRCIPRRWVC 646
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,929,117
Number of Sequences: 59808
Number of extensions: 349435
Number of successful extensions: 1279
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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