Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0952
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69792-6|CAA93669.2|  398|Caenorhabditis elegans Hypothetical pr...   120   1e-27
Z69790-5|CAA93657.2|  398|Caenorhabditis elegans Hypothetical pr...   120   1e-27

>Z69792-6|CAA93669.2|  398|Caenorhabditis elegans Hypothetical
           protein F40E10.6 protein.
          Length = 398

 Score =  120 bits (289), Expect = 1e-27
 Identities = 57/88 (64%), Positives = 68/88 (77%), Gaps = 4/88 (4%)
 Frame = +3

Query: 12  GTVSAGYQNFLICIEMCAAAVALRYAFPAAVYVHSHRDPH----RSLTMQSISSSLKETM 179
           GTV+AG+QNF ICIEM  AA+ALR+AF  + Y  +H   +    R +T+QSISSSLKETM
Sbjct: 261 GTVAAGWQNFFICIEMFFAAIALRFAFNVSAYADAHNASNANDGRPVTLQSISSSLKETM 320

Query: 180 NPKDIMTDAFHNFHPQYQQYTQYSSVMR 263
           NPKDIM DA HNFHPQYQQYTQ+S+  R
Sbjct: 321 NPKDIMQDAIHNFHPQYQQYTQHSNAQR 348


>Z69790-5|CAA93657.2|  398|Caenorhabditis elegans Hypothetical
           protein F40E10.6 protein.
          Length = 398

 Score =  120 bits (289), Expect = 1e-27
 Identities = 57/88 (64%), Positives = 68/88 (77%), Gaps = 4/88 (4%)
 Frame = +3

Query: 12  GTVSAGYQNFLICIEMCAAAVALRYAFPAAVYVHSHRDPH----RSLTMQSISSSLKETM 179
           GTV+AG+QNF ICIEM  AA+ALR+AF  + Y  +H   +    R +T+QSISSSLKETM
Sbjct: 261 GTVAAGWQNFFICIEMFFAAIALRFAFNVSAYADAHNASNANDGRPVTLQSISSSLKETM 320

Query: 180 NPKDIMTDAFHNFHPQYQQYTQYSSVMR 263
           NPKDIM DA HNFHPQYQQYTQ+S+  R
Sbjct: 321 NPKDIMQDAIHNFHPQYQQYTQHSNAQR 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,974,202
Number of Sequences: 27780
Number of extensions: 264179
Number of successful extensions: 910
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)