Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0952
(697 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05940.1 68416.m00676 expressed protein contains Pfam profile... 51 6e-07
At5g26740.2 68418.m03164 expressed protein contains Pfam profile... 48 6e-06
At5g26740.1 68418.m03163 expressed protein contains Pfam profile... 48 6e-06
At1g23070.1 68414.m02884 hypothetical protein contains Pfam prof... 38 0.006
At1g77220.1 68414.m08994 expressed protein contains Pfam profile... 38 0.008
At4g38360.2 68417.m05424 expressed protein contains Pfam profile... 32 0.42
At4g03410.2 68417.m00465 peroxisomal membrane protein-related co... 30 1.3
At4g03410.1 68417.m00464 peroxisomal membrane protein-related co... 30 1.3
At2g32940.1 68415.m04038 PAZ domain-containing protein / piwi do... 30 1.7
At1g52870.2 68414.m05978 peroxisomal membrane protein-related co... 30 1.7
At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein ... 29 2.9
At1g67930.1 68414.m07757 Golgi transport complex protein-related... 29 3.9
At1g11200.1 68414.m01283 expressed protein contains Pfam profile... 29 3.9
>At3g05940.1 68416.m00676 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 422
Score = 51.2 bits (117), Expect = 6e-07
Identities = 29/77 (37%), Positives = 37/77 (48%)
Frame = +3
Query: 21 SAGYQNFLICIEMCAAAVALRYAFPAAVYVHSHRDPHRSLTMQSISSSLKETMNPKDIMT 200
+A +QNF+IC+EM AA A YAFP Y ++ R S S SL + D
Sbjct: 241 AALFQNFIICVEMLIAAAAHFYAFPYKEYAEANVGGAR-----SFSGSLAHALMLNDFYH 295
Query: 201 DAFHNFHPQYQQYTQYS 251
D H F P Y Y Y+
Sbjct: 296 DTVHQFAPTYHDYVLYN 312
>At5g26740.2 68418.m03164 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 422
Score = 48.0 bits (109), Expect = 6e-06
Identities = 27/77 (35%), Positives = 35/77 (45%)
Frame = +3
Query: 21 SAGYQNFLICIEMCAAAVALRYAFPAAVYVHSHRDPHRSLTMQSISSSLKETMNPKDIMT 200
+A +QNF+IC+EM AA YAFP Y ++ S S SL + D
Sbjct: 241 AAHFQNFIICVEMLIAAACHFYAFPYKEYAGANVG-----GSGSFSGSLSHAVKLNDFYH 295
Query: 201 DAFHNFHPQYQQYTQYS 251
D H F P Y Y Y+
Sbjct: 296 DTVHQFAPTYHDYVLYN 312
>At5g26740.1 68418.m03163 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 422
Score = 48.0 bits (109), Expect = 6e-06
Identities = 27/77 (35%), Positives = 35/77 (45%)
Frame = +3
Query: 21 SAGYQNFLICIEMCAAAVALRYAFPAAVYVHSHRDPHRSLTMQSISSSLKETMNPKDIMT 200
+A +QNF+IC+EM AA YAFP Y ++ S S SL + D
Sbjct: 241 AAHFQNFIICVEMLIAAACHFYAFPYKEYAGANVG-----GSGSFSGSLSHAVKLNDFYH 295
Query: 201 DAFHNFHPQYQQYTQYS 251
D H F P Y Y Y+
Sbjct: 296 DTVHQFAPTYHDYVLYN 312
>At1g23070.1 68414.m02884 hypothetical protein contains Pfam profile
PF03619: Domain of unknown function
Length = 414
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/32 (56%), Positives = 20/32 (62%)
Frame = +3
Query: 12 GTVSAGYQNFLICIEMCAAAVALRYAFPAAVY 107
G G Q+FLICIEM AAVA + FPA Y
Sbjct: 271 GRFQNGLQDFLICIEMAIAAVAHLFVFPAEPY 302
>At1g77220.1 68414.m08994 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 484
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +3
Query: 33 QNFLICIEMCAAAVALRYAFPAAVYVHSHRDPHRSLTMQSISSSLKETMNPKDI 194
Q+++ICIEM AAV Y FPAA Y R R++ + S +S+ +P+++
Sbjct: 297 QDYIICIEMGIAAVVHLYVFPAAPYKRGERCV-RNVAVMSDYASIDVPPDPEEV 349
>At4g38360.2 68417.m05424 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 485
Score = 31.9 bits (69), Expect = 0.42
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 33 QNFLICIEMCAAAVALRYAFPAAVY 107
Q+F+ICIEM A+V Y FPA Y
Sbjct: 277 QDFIICIEMGIASVVHLYVFPAKPY 301
>At4g03410.2 68417.m00465 peroxisomal membrane protein-related
contains weak similarity to Swiss-Prot:P42925 22 kDa
peroxisomal membrane protein [Mus musculus]
Length = 361
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 223 GWKLWKASVIMSLGFI-VSLRLLEIDCM 143
GWKLW + +++ G I V RLL +DC+
Sbjct: 257 GWKLWPLAHLVTYGVIPVDQRLLWVDCI 284
>At4g03410.1 68417.m00464 peroxisomal membrane protein-related
contains weak similarity to Swiss-Prot:P42925 22 kDa
peroxisomal membrane protein [Mus musculus]
Length = 317
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 223 GWKLWKASVIMSLGFI-VSLRLLEIDCM 143
GWKLW + +++ G I V RLL +DC+
Sbjct: 257 GWKLWPLAHLVTYGVIPVDQRLLWVDCI 284
>At2g32940.1 68415.m04038 PAZ domain-containing protein / piwi
domain-containing protein similar to SP|O04379 Argonaute
protein (AGO1) {Arabidopsis thaliana}, SP|Q9XGW1 PINHEAD
protein (ZWILLE protein) {Arabidopsis thaliana};
contains Pfam profiles PF02171: Piwi domain, PF02170:
PAZ domain
Length = 878
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -2
Query: 354 GVADGSDALGRRARSQSRSFLPHAYRIPCDRALRSCTGCTAGTADGS 214
GV+DG + G RS+ RSFLP +Y++ A GT G+
Sbjct: 133 GVSDGGSSSGTCKRSK-RSFLPRSYKVQIHYAAEIPLKTVLGTQRGA 178
>At1g52870.2 68414.m05978 peroxisomal membrane protein-related
contains weak similarity to Swiss-Prot:Q07066 22 kDa
peroxisomal membrane protein [Rattus norvegicus]
Length = 366
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 223 GWKLWKASVIMSLGFI-VSLRLLEIDCM 143
GWKLW + +++ G + V RLL +DC+
Sbjct: 299 GWKLWPFAHLITYGLVPVEQRLLWVDCV 326
>At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 443
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 170 GDNESQGHNDGRLPQLPSAVPAVHPVQLRNARSHGIR*AWGRKERLW 310
G+NE DG L +L + A Q H R +WGRK W
Sbjct: 361 GNNERLHVKDGELGELSPDIRATVDEQSDRPSMHPRRSSWGRKSGSW 407
>At1g67930.1 68414.m07757 Golgi transport complex protein-related
similar to golgi transport complex protein (GTC90)
GB:5453670 [Homo sapiens] (stimulates in vitro Golgi
transport J. Biol. Chem. 273 (45), 29565-29576 (1998))
Length = 832
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 299 ERLWLLARRPSASLPSATPPITTRRRRCSAPMTNFSE*TKISPMLN 436
+RL P +SL S PP T S+P+ +F+ +SP L+
Sbjct: 16 QRLSTFKNPPPSSLSSGAPPPQTPSSSSSSPLDSFATDPILSPFLS 61
>At1g11200.1 68414.m01283 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 295
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 33 QNFLICIEMCAAAVALRYAFPAAVY 107
QN L+C+EM ++ +YAF A Y
Sbjct: 257 QNVLVCLEMIVFSIIQQYAFHVAPY 281
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,086,095
Number of Sequences: 28952
Number of extensions: 238381
Number of successful extensions: 733
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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