BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0951 (553 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 29 0.60 SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 27 2.4 SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 25 5.6 SPAC1250.07 |sfc7||TFIIIC subunit Sfc7|Schizosaccharomyces pombe... 25 7.4 SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 25 9.8 SPAC869.09 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.8 SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 25 9.8 SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 25 9.8 SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 25 9.8 SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 25 9.8 >SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosaccharomyces pombe|chr 1|||Manual Length = 398 Score = 28.7 bits (61), Expect = 0.60 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = -2 Query: 420 KRYTASEKSNTFYLHALFRKRSFTSKEASLLKKFN 316 K YT S + N++ R+ +FT ++A + KK N Sbjct: 16 KAYTGSSQGNSYLEDRQKRQNTFTKRKAGIFKKAN 50 >SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces pombe|chr 1|||Manual Length = 874 Score = 26.6 bits (56), Expect = 2.4 Identities = 9/27 (33%), Positives = 16/27 (59%) Frame = +1 Query: 106 LSASAYWILRLPFVYCDERGALPRPRT 186 +S +W +P V+C+ GA+P P + Sbjct: 432 ISRQRFWGTPIPMVHCETCGAVPVPES 458 >SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces pombe|chr 1|||Manual Length = 558 Score = 25.4 bits (53), Expect = 5.6 Identities = 12/39 (30%), Positives = 23/39 (58%) Frame = -1 Query: 466 ILESNLSATRLCKYLKTIHC**EIKYVLSSRSLPQKKFY 350 I+ SN++ +L + ++ +KYVLS S+P + F+ Sbjct: 243 IISSNVAERKLPWFPNILNVFNLVKYVLSIHSVPSRTFF 281 >SPAC1250.07 |sfc7||TFIIIC subunit Sfc7|Schizosaccharomyces pombe|chr 1|||Manual Length = 120 Score = 25.0 bits (52), Expect = 7.4 Identities = 15/53 (28%), Positives = 23/53 (43%) Frame = +1 Query: 79 QPVGSPAIKLSASAYWILRLPFVYCDERGALPRPRTAPSSPLSQGVILAPLFG 237 QP+G+ + S + + R V C R L + R P +P I +P G Sbjct: 60 QPIGTDIVVPSVNDSELSRDGLVLCKRRLMLEQIRLVPKNPSPSSSIHSPTQG 112 >SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr 3|||Manual Length = 418 Score = 24.6 bits (51), Expect = 9.8 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = -3 Query: 341 KLHF*RSLTSMTCSFSRILFCKLTLIC 261 +L+ ++L TCS S LF L L+C Sbjct: 231 RLNLNKALICSTCSISAALFFILLLVC 257 >SPAC869.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 116 Score = 24.6 bits (51), Expect = 9.8 Identities = 14/29 (48%), Positives = 14/29 (48%) Frame = -3 Query: 155 SQYTNGRRRIQ*ADADSLMAGEPTGCGTK 69 S YT G R Q ADAD G GTK Sbjct: 39 SHYTTGTTRGQKADADDAGELREEGFGTK 67 >SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces pombe|chr 2|||Manual Length = 551 Score = 24.6 bits (51), Expect = 9.8 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -3 Query: 56 GTGCTLGSSVTCTGAW 9 GTGCTL S++ AW Sbjct: 259 GTGCTLSSAIASFLAW 274 >SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr 3|||Manual Length = 402 Score = 24.6 bits (51), Expect = 9.8 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = -3 Query: 341 KLHF*RSLTSMTCSFSRILFCKLTLIC 261 +L+ ++L TCS S LF L L+C Sbjct: 221 RLNLNKALICSTCSISAALFFILLLVC 247 >SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit Rpt5|Schizosaccharomyces pombe|chr 1|||Manual Length = 438 Score = 24.6 bits (51), Expect = 9.8 Identities = 11/17 (64%), Positives = 11/17 (64%) Frame = -3 Query: 89 PTGCGTKIGPPGTGCTL 39 P GC GPPGTG TL Sbjct: 219 PKGC-LMFGPPGTGKTL 234 >SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 971 Score = 24.6 bits (51), Expect = 9.8 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 3/93 (3%) Frame = -3 Query: 518 FLLFLIETSLKAMRGILNFRIEPFRNASM*IFKNDTLLVRNQIRSIFTLSSAKEVLLLKK 339 FL L+ +S+ N I P N + + L+V IF + ++ Sbjct: 400 FLFGLLASSIAKYSFFSNNPIWPILNETNGGKQIPALIVGIIACLIFAIFHVQQTTANAV 459 Query: 338 LHF*-RSLTSMTCSFS--RILFCKLTLICSSNV 249 HF R +T+++ + S +LFC T +C S V Sbjct: 460 EHFKLRKITALSAALSLGTVLFCLHTFLCDSTV 492 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,799,269 Number of Sequences: 5004 Number of extensions: 32153 Number of successful extensions: 105 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 105 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 229961028 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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