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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0951
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    29   0.60 
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   2.4  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    25   5.6  
SPAC1250.07 |sfc7||TFIIIC subunit Sfc7|Schizosaccharomyces pombe...    25   7.4  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    25   9.8  
SPAC869.09 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.8  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   9.8  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    25   9.8  
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    25   9.8  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   9.8  

>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 420 KRYTASEKSNTFYLHALFRKRSFTSKEASLLKKFN 316
           K YT S + N++      R+ +FT ++A + KK N
Sbjct: 16  KAYTGSSQGNSYLEDRQKRQNTFTKRKAGIFKKAN 50


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 106 LSASAYWILRLPFVYCDERGALPRPRT 186
           +S   +W   +P V+C+  GA+P P +
Sbjct: 432 ISRQRFWGTPIPMVHCETCGAVPVPES 458


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 466 ILESNLSATRLCKYLKTIHC**EIKYVLSSRSLPQKKFY 350
           I+ SN++  +L  +   ++    +KYVLS  S+P + F+
Sbjct: 243 IISSNVAERKLPWFPNILNVFNLVKYVLSIHSVPSRTFF 281


>SPAC1250.07 |sfc7||TFIIIC subunit Sfc7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 120

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +1

Query: 79  QPVGSPAIKLSASAYWILRLPFVYCDERGALPRPRTAPSSPLSQGVILAPLFG 237
           QP+G+  +  S +   + R   V C  R  L + R  P +P     I +P  G
Sbjct: 60  QPIGTDIVVPSVNDSELSRDGLVLCKRRLMLEQIRLVPKNPSPSSSIHSPTQG 112


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 341 KLHF*RSLTSMTCSFSRILFCKLTLIC 261
           +L+  ++L   TCS S  LF  L L+C
Sbjct: 231 RLNLNKALICSTCSISAALFFILLLVC 257


>SPAC869.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -3

Query: 155 SQYTNGRRRIQ*ADADSLMAGEPTGCGTK 69
           S YT G  R Q ADAD        G GTK
Sbjct: 39  SHYTTGTTRGQKADADDAGELREEGFGTK 67


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 56  GTGCTLGSSVTCTGAW 9
           GTGCTL S++    AW
Sbjct: 259 GTGCTLSSAIASFLAW 274


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 341 KLHF*RSLTSMTCSFSRILFCKLTLIC 261
           +L+  ++L   TCS S  LF  L L+C
Sbjct: 221 RLNLNKALICSTCSISAALFFILLLVC 247


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -3

Query: 89  PTGCGTKIGPPGTGCTL 39
           P GC    GPPGTG TL
Sbjct: 219 PKGC-LMFGPPGTGKTL 234


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
 Frame = -3

Query: 518 FLLFLIETSLKAMRGILNFRIEPFRNASM*IFKNDTLLVRNQIRSIFTLSSAKEVLLLKK 339
           FL  L+ +S+       N  I P  N +    +   L+V      IF +   ++      
Sbjct: 400 FLFGLLASSIAKYSFFSNNPIWPILNETNGGKQIPALIVGIIACLIFAIFHVQQTTANAV 459

Query: 338 LHF*-RSLTSMTCSFS--RILFCKLTLICSSNV 249
            HF  R +T+++ + S   +LFC  T +C S V
Sbjct: 460 EHFKLRKITALSAALSLGTVLFCLHTFLCDSTV 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,269
Number of Sequences: 5004
Number of extensions: 32153
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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