Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0951
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 29 0.60
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 27 2.4
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 25 5.6
SPAC1250.07 |sfc7||TFIIIC subunit Sfc7|Schizosaccharomyces pombe... 25 7.4
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 25 9.8
SPAC869.09 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.8
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 25 9.8
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 25 9.8
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 25 9.8
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 25 9.8
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 28.7 bits (61), Expect = 0.60
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 420 KRYTASEKSNTFYLHALFRKRSFTSKEASLLKKFN 316
K YT S + N++ R+ +FT ++A + KK N
Sbjct: 16 KAYTGSSQGNSYLEDRQKRQNTFTKRKAGIFKKAN 50
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 26.6 bits (56), Expect = 2.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 106 LSASAYWILRLPFVYCDERGALPRPRT 186
+S +W +P V+C+ GA+P P +
Sbjct: 432 ISRQRFWGTPIPMVHCETCGAVPVPES 458
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1
Query: 466 ILESNLSATRLCKYLKTIHC**EIKYVLSSRSLPQKKFY 350
I+ SN++ +L + ++ +KYVLS S+P + F+
Sbjct: 243 IISSNVAERKLPWFPNILNVFNLVKYVLSIHSVPSRTFF 281
>SPAC1250.07 |sfc7||TFIIIC subunit Sfc7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 120
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +1
Query: 79 QPVGSPAIKLSASAYWILRLPFVYCDERGALPRPRTAPSSPLSQGVILAPLFG 237
QP+G+ + S + + R V C R L + R P +P I +P G
Sbjct: 60 QPIGTDIVVPSVNDSELSRDGLVLCKRRLMLEQIRLVPKNPSPSSSIHSPTQG 112
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 341 KLHF*RSLTSMTCSFSRILFCKLTLIC 261
+L+ ++L TCS S LF L L+C
Sbjct: 231 RLNLNKALICSTCSISAALFFILLLVC 257
>SPAC869.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 116
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -3
Query: 155 SQYTNGRRRIQ*ADADSLMAGEPTGCGTK 69
S YT G R Q ADAD G GTK
Sbjct: 39 SHYTTGTTRGQKADADDAGELREEGFGTK 67
>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 551
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 56 GTGCTLGSSVTCTGAW 9
GTGCTL S++ AW
Sbjct: 259 GTGCTLSSAIASFLAW 274
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 341 KLHF*RSLTSMTCSFSRILFCKLTLIC 261
+L+ ++L TCS S LF L L+C
Sbjct: 221 RLNLNKALICSTCSISAALFFILLLVC 247
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -3
Query: 89 PTGCGTKIGPPGTGCTL 39
P GC GPPGTG TL
Sbjct: 219 PKGC-LMFGPPGTGKTL 234
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 24.6 bits (51), Expect = 9.8
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Frame = -3
Query: 518 FLLFLIETSLKAMRGILNFRIEPFRNASM*IFKNDTLLVRNQIRSIFTLSSAKEVLLLKK 339
FL L+ +S+ N I P N + + L+V IF + ++
Sbjct: 400 FLFGLLASSIAKYSFFSNNPIWPILNETNGGKQIPALIVGIIACLIFAIFHVQQTTANAV 459
Query: 338 LHF*-RSLTSMTCSFS--RILFCKLTLICSSNV 249
HF R +T+++ + S +LFC T +C S V
Sbjct: 460 EHFKLRKITALSAALSLGTVLFCLHTFLCDSTV 492
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,269
Number of Sequences: 5004
Number of extensions: 32153
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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