Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0951
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0469 - 3552409-3553368 31 0.81
02_01_0251 - 1652356-1652522,1652564-1652608,1652658-1652733,165... 30 1.4
06_01_0922 - 7113781-7113942,7114093-7114235,7115305-7115506,711... 29 1.9
01_06_1614 - 38648495-38649706 29 1.9
01_05_0409 - 21896478-21897005,21897098-21897292,21897405-218975... 29 1.9
02_01_0468 + 3357043-3357226,3357695-3358155 29 2.5
04_01_0244 - 3194141-3195091,3195301-3195312 29 3.3
10_08_0974 + 21969713-21971914 28 4.3
07_03_0271 - 16138605-16139072,16139174-16139327,16139465-16139934 27 7.5
03_05_0085 - 20638769-20639150,20640054-20640286 27 7.5
02_01_0766 + 5706714-5707013,5707100-5707217,5708329-5708753 27 7.5
10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595 27 10.0
10_07_0029 + 12031711-12032464,12044289-12044386 27 10.0
08_02_0859 + 21960172-21961121,21961244-21961304,21961406-21962527 27 10.0
08_01_0220 - 1751367-1752854 27 10.0
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 27 10.0
03_01_0077 - 630807-631094 27 10.0
>07_01_0469 - 3552409-3553368
Length = 319
Score = 30.7 bits (66), Expect = 0.81
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 13 APVHVTLDPRVQPVPGGPIFVPQPVGSPAIKLSASAYWILRLP 141
AP + P VP P P PV +PA LS + +R+P
Sbjct: 213 APAAPPVPPAAPAVPAAPALAPVPVSAPASALSFAPASAVRVP 255
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 13 APVHVTLDPRVQPVPGGPIFVPQPVGSPAI 102
APV + L PR P P P P +PA+
Sbjct: 197 APVRIQLAPRNPPPSAAPAAPPVPPAAPAV 226
>02_01_0251 -
1652356-1652522,1652564-1652608,1652658-1652733,
1652976-1653041,1653120-1653238,1653334-1653508,
1653604-1653881,1654253-1654436,1654455-1654550,
1654872-1655012,1655091-1655123
Length = 459
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/63 (36%), Positives = 27/63 (42%)
Frame = +1
Query: 1 GHAQAPVHVTLDPRVQPVPGGPIFVPQPVGSPAIKLSASAYWILRLPFVYCDERGALPRP 180
G A AP P PVP P V +PVG P K AS + P V+ + A RP
Sbjct: 210 GMAMAPEEPVQSP---PVP--PPHVEEPVGEPVKKTYASILRTAKAPLVFPVAQPAPTRP 264
Query: 181 RTA 189
A
Sbjct: 265 HQA 267
>06_01_0922 -
7113781-7113942,7114093-7114235,7115305-7115506,
7115590-7115685,7117053-7117139,7117237-7117638
Length = 363
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 116 DADSLMAGEPTGCGTKIGPPGTGCTLGSSVTCTGAWA 6
D D+L+ GE G + G P G + SS++C A A
Sbjct: 27 DVDALLCGEDAGELEREGEPAQGSSPSSSLSCAAAAA 63
>01_06_1614 - 38648495-38649706
Length = 403
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 133 RLPFVYCDERGALPRPRTAPSSPLSQGVI 219
RL + + RGALP P PSS S+G I
Sbjct: 53 RLEDILAETRGALPLPSPTPSSSGSEGTI 81
>01_05_0409 -
21896478-21897005,21897098-21897292,21897405-21897542,
21897641-21897728,21897837-21897925,21898032-21898553
Length = 519
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 22 HVTLDPRVQPVP-GGPIFVPQPVGSPAIKLSASAYWI 129
HV L PRV P P + +P P SP I+LS +++
Sbjct: 441 HVNLSPRVVPSPTTNRLPIPSPRPSPKIRLSPRLHYM 477
>02_01_0468 + 3357043-3357226,3357695-3358155
Length = 214
Score = 29.1 bits (62), Expect = 2.5
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = -3
Query: 275 LTLICSSNVQSASPNSGASITPCDSGEEGAVRG-RGSAPRSSQYTNGRRRIQ*ADADSLM 99
+ ++ ++ SASP S +S SG G G AP + T A+ +
Sbjct: 124 IVMVANATGSSASPPSSSSSPSSPSGGGGGGGAPAGQAPPGAPATPAGTNSSPANGGAAG 183
Query: 98 AGEPTGCGTKIGPPGTGCTLGSSVTC 21
G +G G + G +L +++ C
Sbjct: 184 GGAKSGAGLTVAASGLAGSLIAAIAC 209
>04_01_0244 - 3194141-3195091,3195301-3195312
Length = 320
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +1
Query: 13 APVHVTLDPRVQPVPGGPIFVPQPVGSPAIKLSASAY 123
APV + L PR P P P P P PA A +
Sbjct: 201 APVRIQLAPRNPPPPAAPAAPPVPPAVPAAPAPAPVH 237
>10_08_0974 + 21969713-21971914
Length = 733
Score = 28.3 bits (60), Expect = 4.3
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 40 RVQPVPGGPIFVPQPVGSPAIKLSASAYWILRLPFVYCDERGA-LPRPRTAPSSPLS 207
R QP P P P SP LS W+L Y DE G+ LPR + P+S LS
Sbjct: 81 RPQPTAAAP---PPPSLSPF--LSRLELWVLAYQKAYADETGSYLPR-SSIPASTLS 131
>07_03_0271 - 16138605-16139072,16139174-16139327,16139465-16139934
Length = 363
Score = 27.5 bits (58), Expect = 7.5
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = -3
Query: 212 PCDSGEEGAVRGRGSAPRSSQYTNGRRRIQ*ADADSLMAGEPTGCGTKIGPPGTGCTLGS 33
P D +GA G G+ R ++ A ++ +AG G GT G G G LGS
Sbjct: 26 PFDPAADGAQGGLGALRRGHRFATSYSSFGTAASEDDLAG--AGAGTD-GGVGAGIPLGS 82
Query: 32 S 30
S
Sbjct: 83 S 83
>03_05_0085 - 20638769-20639150,20640054-20640286
Length = 204
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/59 (25%), Positives = 21/59 (35%)
Frame = -3
Query: 263 CSSNVQSASPNSGASITPCDSGEEGAVRGRGSAPRSSQYTNGRRRIQ*ADADSLMAGEP 87
C + G S P + G E V +AP + + IQ DAD +P
Sbjct: 88 CEIRTRKGKDVEGGSSVPIEVGSEEEVNAEDAAPVAKEDQGHSEAIQDEDADHHQVNDP 146
>02_01_0766 + 5706714-5707013,5707100-5707217,5708329-5708753
Length = 280
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = -3
Query: 299 FSRILFCKLTLICSSNVQSASPNSGASITPCDSGEEGAVRGRGSAPRSSQYTNG 138
F+ L KL C + P + S+ D ++ +GS P SS NG
Sbjct: 170 FTTDLLYKLVKECEEMLDQLMPTNEHSVASEDGKDDSEGEEKGSKPSSSSSANG 223
>10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595
Length = 514
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 25 VTLDPRVQPVPGGPIFVPQPVGSPAIKLSASA 120
V L PR +PV G VP P P +K+ A A
Sbjct: 420 VQLQPRNEPVSIGKGVVPLPAIRPPVKVEAPA 451
>10_07_0029 + 12031711-12032464,12044289-12044386
Length = 283
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +1
Query: 13 APVHVTLDPRVQPVPGGPIFVPQPVGSPAIKLSASA 120
APV + L PR P P P P PA + A A
Sbjct: 197 APVRIQLAPRNPPPAAAPAAPPVPPAVPAAQAPAPA 232
>08_02_0859 + 21960172-21961121,21961244-21961304,21961406-21962527
Length = 710
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 138 EAEDPVGGRRQLDGRRAHGLRDEDRPAGHRLH 43
E ED GG LD R +HG+ D G+R++
Sbjct: 630 EVEDIGGGALFLDHRTSHGVGSPDGGHGNRIY 661
>08_01_0220 - 1751367-1752854
Length = 495
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 151 CDERGALPRPRTAPSSPLSQGVILAPL 231
C ER + P AP++PL + L PL
Sbjct: 197 CQERHVVSTPEKAPAAPLPRSEYLRPL 223
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 27.1 bits (57), Expect = 10.0
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +1
Query: 22 HVTLDPRVQPVPGGPIFVPQPVGSPAIKL-SASAYWILRLPFVYCDERGALPRPRTAPSS 198
H TL+P P PG P +G P I L S+SA +P LP P P
Sbjct: 154 HPTLNPSGAPPPGKPPMYKSSIG-PRIPLPSSSAGASSSMPGTEEAGPSTLPPPPPPPPL 212
Query: 199 PLS 207
P S
Sbjct: 213 PAS 215
>03_01_0077 - 630807-631094
Length = 95
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 77 GTKIGPPGTGCTLGSSVTCTGAWA 6
G +G G GC G CTGA A
Sbjct: 19 GGVVGVAGAGCNAGQLTVCTGAIA 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,595,773
Number of Sequences: 37544
Number of extensions: 222792
Number of successful extensions: 868
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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