Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0951
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)                 31   0.63 
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    30   1.1  
SB_32637| Best HMM Match : Glyoxalase (HMM E-Value=1.5e-08)            29   1.9  
SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_26705| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.4  
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_57137| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)                  27   7.7  
SB_22013| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.54)           27   7.7  
SB_48456| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_10600| Best HMM Match : XG_FTase (HMM E-Value=1.5)                  27   7.7  

>SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)
          Length = 530

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 10  QAPVHVTLDPRVQPVPGGPIFVPQPVGSPAIKL 108
           QAP+ V + P V   P  P  VPQ VGSP   +
Sbjct: 407 QAPIAVHVPPAVPQHPAPPPAVPQHVGSPGFSV 439


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -2

Query: 144  EREAEDPVGGRRQLDGRRAHGLRDEDRPAGHRLHPGVQRDVYR 16
            ER  +D   GRR  D RR H +R +    G R    + R  YR
Sbjct: 1713 ERPRDDSDRGRRDYDPRRPHDIRPDGDRRGDRPRDELDRKGYR 1755


>SB_32637| Best HMM Match : Glyoxalase (HMM E-Value=1.5e-08)
          Length = 203

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 420 KRYTASEKSNTFYLHALF-RKRSFTSKEASLLKK-FNF 313
           KR+   E  + F  HALF  KR  T +  S++KK FNF
Sbjct: 31  KRWRKQETGDDFKAHALFSSKRLLTRRPQSIVKKYFNF 68


>SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 848

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 16  PVHVTLDPRVQPVPGGPIFVPQPVGSPAIKLSASAYW 126
           P+HV   PRV  + G P+   +P+ S A ++ A  Y+
Sbjct: 186 PLHVNQAPRVIHMAGQPVHFNRPIASEARQVLARPYF 222


>SB_26705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 13  APVHVTLDPRVQPVPGGPIFVPQPVGSPAIKLSASA 120
           +P+H+ L P + P P   I   QP GS + + +A+A
Sbjct: 16  SPIHIILGPPLTPTPTQCIEFLQPGGSTSSRAAATA 51


>SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1296

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 320 LTSMTCSFSRILFCKLTLICSSNVQSASPNSGASITP 210
           +TS     + ++  K+   CS+N  SA+P +  ++TP
Sbjct: 727 VTSTAMETATVMSTKVVTTCSANCPSATPTTSLTMTP 763


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +1

Query: 4   HAQAPVHVTLDPRVQPVPGGPIFVPQPVGSPAIKLSASAYWILRLP 141
           H + P   T  PRV P PG P     P G+P  +L  S  +  RLP
Sbjct: 578 HPRVPPPGTPHPRVPP-PGAPHPKVPPPGAPYQRLPYSGAYHPRLP 622


>SB_57137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 126 PVGGRRQLDGRRAHGLRDEDRPAGHRLHP 40
           PV       GR  HG+ D D+  G +LHP
Sbjct: 320 PVRKTAYQTGRAPHGVVDSDKRIGTKLHP 348


>SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)
          Length = 722

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 159 LVAVHEREAEDPVGGRRQLDGRR 91
           L+A+ E+E E+  GGR+Q D R+
Sbjct: 429 LIAMEEKEREELGGGRQQSDARK 451


>SB_22013| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.54)
          Length = 341

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 239 SPNSGASITPCDS-GEEGAVRGRGSAPRSSQYTN 141
           SP+S  +  P  S G +GA+R   S  RSS Y N
Sbjct: 275 SPSSSINTHPTRSYGSQGALRSSNSFNRSSSYPN 308


>SB_48456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -3

Query: 254 NVQSASPNSGASITPCDSGEEGAVRGRGSAPRSSQYTNGRRRIQ*ADADSLMAGEPT 84
           +VQSA PNS  S TP +   +G+   +      S ++NG       D+DS  A   T
Sbjct: 157 HVQSADPNSERSETPTNFASQGS---QVQTVIQSPFSNGSSPTHHGDSDSTDANRFT 210


>SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = -2

Query: 147 HEREAEDPVGGRRQLDG-RRAHGLRDEDRPAGHRLHPGVQRD 25
           H     D  G RR  DG RR HG    D     R H G +RD
Sbjct: 69  HGGTGRDHGGTRRDHDGTRRDHGGTRRDHGGTRRDHGGTRRD 110


>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2201

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 23/62 (37%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
 Frame = -3

Query: 227 GASITPCDSGEEGAVRGRG----SAPRSSQYTNGRRRIQ*ADADSLMAGEPTGCGTKIGP 60
           GAS  P   G  G V  RG    S PR  Q T G+  +Q           P G    IGP
Sbjct: 532 GASGPPGIPGLNGTVGPRGPQGFSGPRGLQGTPGQNGLQGPPGPQ----GPMGVNNSIGP 587

Query: 59  PG 54
           PG
Sbjct: 588 PG 589


>SB_10600| Best HMM Match : XG_FTase (HMM E-Value=1.5)
          Length = 420

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 102 DGRRAHGLRDEDRPAGHRLHPGVQRDV 22
           D RR  GLR  D   G   HPG +R V
Sbjct: 140 DERRYKGLRSRDNRWGLENHPGYERQV 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,421,414
Number of Sequences: 59808
Number of extensions: 245963
Number of successful extensions: 774
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)