Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0951
(553 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83232-4|CAB05756.2| 891|Caenorhabditis elegans Hypothetical pr... 37 0.008
AF003148-8|AAB54211.2| 346|Caenorhabditis elegans Hypothetical ... 31 0.73
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 28 3.9
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 28 3.9
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 28 3.9
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 28 3.9
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 28 3.9
U00047-13|AAY43978.1| 301|Caenorhabditis elegans Hypothetical p... 27 6.8
>Z83232-4|CAB05756.2| 891|Caenorhabditis elegans Hypothetical
protein K04B12.3 protein.
Length = 891
Score = 37.1 bits (82), Expect = 0.008
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +1
Query: 10 QAPVHVTLDPRVQPVPGGPIFVPQPVGSPAIKLSASAYWILRLPFVYCDERGA 168
+APVH+T+DP+V ++ G ++L S Y+IL LP VY GA
Sbjct: 811 KAPVHITIDPKVLIPTHEGVY---GTGQEPLELHHSKYYILHLPTVYSGPSGA 860
>AF003148-8|AAB54211.2| 346|Caenorhabditis elegans Hypothetical
protein F32B5.3 protein.
Length = 346
Score = 30.7 bits (66), Expect = 0.73
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +1
Query: 55 PGGPIFVPQPVGSPAIKLSA-SAYWILRLP-FVYCDE-RGALPRPRTAPSSPLSQGVILA 225
PGG +F+ P+G+ AI+ +A Y +RL +Y E P+ S+ + A
Sbjct: 272 PGGLLFIGFPLGTDAIQFNAHRIYGSIRLAMMMYGFEWIDTFSGDSEQPNDLTSERLHAA 331
Query: 226 PLFGLAD*TLL 258
PLFGL TL+
Sbjct: 332 PLFGLVQNTLV 342
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 28.3 bits (60), Expect = 3.9
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +1
Query: 7 AQAPVHVTLDPRVQPVP-GGPIFVPQPV-GSP--AIKLSASAYWILRLPFVYCDERGALP 174
A+ P H + P+ Q +P G P + V G+P A LS LPF D+RG L
Sbjct: 1601 ARPPQHPVITPQTQTIPEGDPARIQCTVPGNPSAAQHLSFERVDGKGLPFGSSDDRGVLT 1660
Query: 175 RPRT 186
P T
Sbjct: 1661 IPST 1664
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 28.3 bits (60), Expect = 3.9
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +1
Query: 7 AQAPVHVTLDPRVQPVP-GGPIFVPQPV-GSP--AIKLSASAYWILRLPFVYCDERGALP 174
A+ P H + P+ Q +P G P + V G+P A LS LPF D+RG L
Sbjct: 1694 ARPPQHPVITPQTQTIPEGDPARIQCTVPGNPSAAQHLSFERVDGKGLPFGSSDDRGVLT 1753
Query: 175 RPRT 186
P T
Sbjct: 1754 IPST 1757
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 28.3 bits (60), Expect = 3.9
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +1
Query: 7 AQAPVHVTLDPRVQPVP-GGPIFVPQPV-GSP--AIKLSASAYWILRLPFVYCDERGALP 174
A+ P H + P+ Q +P G P + V G+P A LS LPF D+RG L
Sbjct: 1694 ARPPQHPVITPQTQTIPEGDPARIQCTVPGNPSAAQHLSFERVDGKGLPFGSSDDRGVLT 1753
Query: 175 RPRT 186
P T
Sbjct: 1754 IPST 1757
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 28.3 bits (60), Expect = 3.9
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +1
Query: 7 AQAPVHVTLDPRVQPVP-GGPIFVPQPV-GSP--AIKLSASAYWILRLPFVYCDERGALP 174
A+ P H + P+ Q +P G P + V G+P A LS LPF D+RG L
Sbjct: 1601 ARPPQHPVITPQTQTIPEGDPARIQCTVPGNPSAAQHLSFERVDGKGLPFGSSDDRGVLT 1660
Query: 175 RPRT 186
P T
Sbjct: 1661 IPST 1664
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 28.3 bits (60), Expect = 3.9
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +1
Query: 7 AQAPVHVTLDPRVQPVP-GGPIFVPQPV-GSP--AIKLSASAYWILRLPFVYCDERGALP 174
A+ P H + P+ Q +P G P + V G+P A LS LPF D+RG L
Sbjct: 1694 ARPPQHPVITPQTQTIPEGDPARIQCTVPGNPSAAQHLSFERVDGKGLPFGSSDDRGVLT 1753
Query: 175 RPRT 186
P T
Sbjct: 1754 IPST 1757
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 28.3 bits (60), Expect = 3.9
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +1
Query: 7 AQAPVHVTLDPRVQPVP-GGPIFVPQPV-GSP--AIKLSASAYWILRLPFVYCDERGALP 174
A+ P H + P+ Q +P G P + V G+P A LS LPF D+RG L
Sbjct: 1694 ARPPQHPVITPQTQTIPEGDPARIQCTVPGNPSAAQHLSFERVDGKGLPFGSSDDRGVLT 1753
Query: 175 RPRT 186
P T
Sbjct: 1754 IPST 1757
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 7 AQAPVHVTLDPRVQPVPGGPIFVPQPVGSP 96
A AP P QP PGGP P G P
Sbjct: 135 ASAPCEPVTQPPCQPCPGGPPGPAGPAGPP 164
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 7 AQAPVHVTLDPRVQPVPGGPIFVPQPVGSP 96
A AP + P QP P GP P P G+P
Sbjct: 150 AAAPCEPSTPPPCQPCPAGPPGPPGPDGTP 179
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 7 AQAPVHVTLDPRVQPVPGGPIFVPQPVGSP 96
A AP P QP PGGP P G P
Sbjct: 135 ASAPCEPVTQPPCQPCPGGPPGPAGPAGPP 164
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 28.3 bits (60), Expect = 3.9
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +1
Query: 7 AQAPVHVTLDPRVQPVP-GGPIFVPQPV-GSP--AIKLSASAYWILRLPFVYCDERGALP 174
A+ P H + P+ Q +P G P + V G+P A LS LPF D+RG L
Sbjct: 1693 ARPPQHPVITPQTQTIPEGDPARIQCTVPGNPSAAQHLSFERVDGKGLPFGSSDDRGVLT 1752
Query: 175 RPRT 186
P T
Sbjct: 1753 IPST 1756
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 7 AQAPVHVTLDPRVQPVPGGPIFVPQPVGSP 96
A AP P QP PGGP P G P
Sbjct: 135 ASAPCEPVTQPPCQPCPGGPPGPAGPAGPP 164
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 7 AQAPVHVTLDPRVQPVPGGPIFVPQPVGSP 96
A AP P QP PGGP P G P
Sbjct: 135 ASAPCEPVTQPPCQPCPGGPPGPAGPAGPP 164
>U00047-13|AAY43978.1| 301|Caenorhabditis elegans Hypothetical
protein ZK418.11 protein.
Length = 301
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 446 GKVRF*NLIFLSSLSKMFQSKTIRSFAKILVLF 544
G++R+ N+IFLS L + KTI A++ LF
Sbjct: 256 GRIRYLNIIFLSQLIE----KTIEDLAQLFTLF 284
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,053,608
Number of Sequences: 27780
Number of extensions: 190792
Number of successful extensions: 708
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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