Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0951
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29120.2 68414.m03565 expressed protein                             32   0.29 
At1g29120.1 68414.m03564 expressed protein                             32   0.29 
At4g01050.1 68417.m00142 hydroxyproline-rich glycoprotein family...    29   1.6  
At3g22490.1 68416.m02843 late embryogenesis abundant protein, pu...    29   1.6  
At1g61560.1 68414.m06935 seven transmembrane MLO family protein ...    29   1.6  
At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1) domain...    29   2.1  
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    29   2.1  
At3g10040.1 68416.m01204 expressed protein  est match                  29   2.1  
At1g71520.1 68414.m08267 AP2 domain-containing transcription fac...    28   3.6  
At5g50290.1 68418.m06227 hypothetical protein                          27   6.3  
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s...    27   8.3  

>At1g29120.2 68414.m03565 expressed protein
          Length = 455

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 106 LSASAYWILRLPFVYCDERGALPRPRTAPSSPLSQGVILA 225
           +S ++ WI + PF Y  +RG   +P +  +   S GV+ A
Sbjct: 1   MSTASSWIQQPPFRYLPDRGGFSKPSSRSARQFSSGVVSA 40


>At1g29120.1 68414.m03564 expressed protein
          Length = 455

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 106 LSASAYWILRLPFVYCDERGALPRPRTAPSSPLSQGVILA 225
           +S ++ WI + PF Y  +RG   +P +  +   S GV+ A
Sbjct: 1   MSTASSWIQQPPFRYLPDRGGFSKPSSRSARQFSSGVVSA 40


>At4g01050.1 68417.m00142 hydroxyproline-rich glycoprotein family
           protein
          Length = 466

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 22/61 (36%), Positives = 32/61 (52%)
 Frame = +1

Query: 46  QPVPGGPIFVPQPVGSPAIKLSASAYWILRLPFVYCDERGALPRPRTAPSSPLSQGVILA 225
           +PVP  P  VP+PV  PAI+ + +A  ++  P     E  A P+P + P SP +    L 
Sbjct: 403 KPVPE-PEPVPEPVPVPAIEAAVAAQ-VITEP----TETEAKPKPHSRPLSPYASYPDLK 456

Query: 226 P 228
           P
Sbjct: 457 P 457


>At3g22490.1 68416.m02843 late embryogenesis abundant protein,
           putative / LEA protein, putative similar to LEA protein
           in group 5 (AtECP31) [Arabidopsis thaliana] GI:1526422;
           contains Pfam profile PF04927: Seed maturation protein
          Length = 262

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 173 GSAPRSSQYTNGRRRIQ*ADADSLMAGEPTGCGTKIGPPG 54
           G A  ++  T G + +  +DA ++ A E   CGT +  PG
Sbjct: 139 GEALEATVQTAGNKPVDQSDAAAIQAAEVRACGTNVIAPG 178


>At1g61560.1 68414.m06935 seven transmembrane MLO family protein /
           MLO-like protein 6 (MLO6) idenctical to membrane protein
           Mlo6 [Arabidopsis thaliana] gi|14091582|gb|AAK53799;
           similar to MLO protein SWISS-PROT:P93766,
           NCBI_gi:1877221 [Hordeum vulgare][Barley]; contains Pfam
           profile          PF03094: Mlo family
          Length = 583

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 233 NSGASITPCDSGEEGAVRGRGSAPRSSQYTNGRRRI 126
           N  AS+ PC + EE    G+   P+  +  N RR++
Sbjct: 87  NIAASMHPCSASEEARKYGKKDVPKEDEEENLRRKL 122


>At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein predicted proteins,
           Arabidopsis thaliana and Drosophila melanogaster
           contains Pfam profile PF00564: PB1 domain
          Length = 531

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 40  RVQPVPGGPIFVPQPVGSPAI 102
           +V P+P  P+ VPQPV  P +
Sbjct: 195 KVAPIPPSPVKVPQPVPEPVV 215


>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 254 NVQSASPNSGASITPCDSGEEGAVRGRGSAPRSSQYTNG 138
           ++ +  P SG    P  +G    + G G+ PR SQ+T+G
Sbjct: 205 HLSNGPPPSGMPGGPLSNGPPPPMMGPGAFPRGSQFTSG 243


>At3g10040.1 68416.m01204 expressed protein  est match
          Length = 431

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 260 SSNVQSASPNSGASITPCDSGEEGAVRGRGSAPRSSQYTNGRRRI 126
           +S  +  SP SG     CD  + G+  G G  P  S  T+G+R++
Sbjct: 57  ASKPKQMSPISGGG---CDDEDRGSGSGSGCNPEDSAGTDGKRKL 98


>At1g71520.1 68414.m08267 AP2 domain-containing transcription
           factor, putative
          Length = 143

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -3

Query: 338 LHF*RSLTSMTCSFSRILFCKLTL-ICSSNVQSASPNSGASITPCDSGEEGAVRGRGSAP 162
           LH   SL   + +F  +L   L   I   ++Q A+ ++G ++   D+G  GAV G G   
Sbjct: 60  LHRPSSLDDESFNFPHLLTTSLASNISPKSIQKAASDAGMAV---DAGFHGAVSGSGGCE 116

Query: 161 RSSQYTN 141
             S   N
Sbjct: 117 ERSSMAN 123


>At5g50290.1 68418.m06227 hypothetical protein 
          Length = 335

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 116 DADSLMAGEPTGCGTKIGPPGTGCTLGSSVTCT 18
           + DS+++  PTG  + + P   GC   ++ TCT
Sbjct: 265 NCDSVIS--PTGASSSVRPKAIGCKFQNAFTCT 295


>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
           similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
           [Drosophila melanogaster]
          Length = 926

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 245 SASPNSGASITPCDSGEEG--AVRGRGSAPRSSQYTNGRR 132
           S + +SG + T  +SG  G    RGRG   R  Q + GRR
Sbjct: 844 SINNSSGNATTGSNSGGSGRRGSRGRGRGGRGGQSSGGRR 883


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,306,515
Number of Sequences: 28952
Number of extensions: 169550
Number of successful extensions: 560
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)