Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0950
         (774 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I5Y7 Cluster: Putative uncharacterized protein; n=3; ...    34   3.4  
UniRef50_A5Y732 Cluster: Transposase; n=1; Cucumis melo|Rep: Tra...    34   4.5  

>UniRef50_Q8I5Y7 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 2284

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 504 PDLLFHHFLMKSRVYSNYNKLHSTRIYNLNNH 599
           P++   HFL    + + YNKL+  R Y++NNH
Sbjct: 9   PNVKNDHFLENKNLINEYNKLYMHRYYHINNH 40


>UniRef50_A5Y732 Cluster: Transposase; n=1; Cucumis melo|Rep:
           Transposase - Cucumis melo (Muskmelon)
          Length = 347

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -1

Query: 738 PIVIYNNFEICLHQ*PWGNTGLKFLATYANSTNSSSFLQTVDYLFPHGCLSYISWYCVIC 559
           P +IY  F +CLH      T  KF   +  ST  ++F     Y+  +  LSY++W+  +C
Sbjct: 152 PRLIYAFFGMCLHD----QTNFKFPRVFTISTPPTTFKNL--YVTVYNPLSYVTWFYYLC 205


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 677,155,319
Number of Sequences: 1657284
Number of extensions: 12975593
Number of successful extensions: 27895
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27882
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65027411410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)