Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0950
         (774 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    27   0.22 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   6.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   6.3  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   8.3  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -3

Query: 598 WLFKLYILVLCNLL*FEYTLLFI 530
           W+F+LY+L+LC+ +  E+  + +
Sbjct: 206 WIFQLYLLILCDQILREFDQIVV 228


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 263 ENTNPHYQNIVRRIHCQLGKC 325
           E   PH  N+V R  C+ G C
Sbjct: 125 EPFRPHPHNLVGREGCKKGVC 145


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 308 CQLGKCISIGTIP 346
           C+L KC+S+G  P
Sbjct: 243 CRLKKCLSVGMRP 255


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 349 VWDCSNTDTFSELAMNSPYNILI 281
           +W+C NT   SE      Y+ILI
Sbjct: 288 LWNCQNTRVASEDFKAIWYSILI 310


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,691
Number of Sequences: 336
Number of extensions: 3813
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)