Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0950
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    28   1.3  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.3  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    27   3.0  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    26   5.2  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   6.9  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   9.1  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -1

Query: 666  LATYANSTNSSSFLQTVDYLFP--HGCLSYISWYCVICCNLSTLCFSLKSGEI 514
            L  Y     +   +Q  D++    H CL  + W   I  +L + CFSLK+ EI
Sbjct: 965  LFPYLEPQEAELVIQIFDFISSDTHKCLQGLKW--AIPTSLDSACFSLKAKEI 1015


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 177 FIKRTRILKKYRN*ILLSDMIHSRNYN 257
           FIK  ++L K RN +L+ D++    YN
Sbjct: 310 FIKFVQLLSKNRNWVLMRDIVQLEEYN 336


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 606 FPHGCLSYISWYCVICCNLSTLCFSLKSGEIAGQVLR 496
           FP   + Y+  YC  C NL T   S+  G++  Q+ R
Sbjct: 589 FPESLIPYLPVYCDACLNLGTHSESI--GDLEHQIRR 623


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 145 RNKRFNRISTCSLREQGY*KNIGTKFSC 228
           ++ + NR+  C+    GY  N G KF+C
Sbjct: 136 KSMQTNRLPGCTAESWGYHGNSGEKFNC 163


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 355 TALHQESSILQSSSPN*MQVTSTYCDAT 438
           T+LHQ   I  SSS N MQ +S    +T
Sbjct: 278 TSLHQSFGIASSSSNNYMQTSSELTSST 305


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = -1

Query: 735 IVIYNNFEICLHQ*PWGNTGLKFLATY-ANSTNSSSFLQTVDYLFPHGCLSYISWYCVIC 559
           I  Y  F +   Q  +G   +K    Y AN   +S+F       F +  LS I W CV  
Sbjct: 639 IATYVYFSLVPLQSTFGKLSVKDSRKYLANKYFTSNF---APLKFDNQALSVIIWVCVFT 695

Query: 558 CNLSTLCFSL 529
           C  +   F L
Sbjct: 696 CKFAESYFFL 705


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,897
Number of Sequences: 5004
Number of extensions: 60769
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)