Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0950
         (774 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC002764-1|AAH02764.2|  528|Homo sapiens Wolf-Hirschhorn syndrom...    31   6.1  
AL132868-2|CAM15219.1|  539|Homo sapiens Wolf-Hirschhorn syndrom...    31   6.1  
AK222853-1|BAD96573.1|  528|Homo sapiens Wolf-Hirschhorn syndrom...    31   6.1  
AF101434-1|AAC72982.1|  525|Homo sapiens Wolf-Hirschhorn syndrom...    31   6.1  
AB044549-1|BAB18651.1|  549|Homo sapiens Wolf-Hirshhorn syndrome...    31   6.1  

>BC002764-1|AAH02764.2|  528|Homo sapiens Wolf-Hirschhorn syndrome
           candidate 2 protein.
          Length = 528

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 257 QIENTNPHYQNIVRRIHCQLGKCISIGTIPNILQHCIKNHLFCSHPPLT 403
           ++E  NP+ Q+I+  +  ++G+C +   +P   Q+  KN L     PLT
Sbjct: 109 ELEEQNPNVQDILGELREKVGECEASAMLPLECQYLNKNALTTLAGPLT 157


>AL132868-2|CAM15219.1|  539|Homo sapiens Wolf-Hirschhorn syndrome
           candidate 2 protein.
          Length = 539

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 257 QIENTNPHYQNIVRRIHCQLGKCISIGTIPNILQHCIKNHLFCSHPPLT 403
           ++E  NP+ Q+I+  +  ++G+C +   +P   Q+  KN L     PLT
Sbjct: 120 ELEEQNPNVQDILGELREKVGECEASAMLPLECQYLNKNALTTLAGPLT 168


>AK222853-1|BAD96573.1|  528|Homo sapiens Wolf-Hirschhorn syndrome
           candidate 2 protein variant protein.
          Length = 528

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 257 QIENTNPHYQNIVRRIHCQLGKCISIGTIPNILQHCIKNHLFCSHPPLT 403
           ++E  NP+ Q+I+  +  ++G+C +   +P   Q+  KN L     PLT
Sbjct: 109 ELEEQNPNVQDILGELREKVGECEASAMLPLECQYLNKNALTTLAGPLT 157


>AF101434-1|AAC72982.1|  525|Homo sapiens Wolf-Hirschhorn syndrome
           candidate 2 protein protein.
          Length = 525

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 257 QIENTNPHYQNIVRRIHCQLGKCISIGTIPNILQHCIKNHLFCSHPPLT 403
           ++E  NP+ Q+I+  +  ++G+C +   +P   Q+  KN L     PLT
Sbjct: 106 ELEEQNPNVQDILGELREKVGECEASAMLPLECQYLNKNALTTLAGPLT 154


>AB044549-1|BAB18651.1|  549|Homo sapiens Wolf-Hirshhorn syndrome
           candidate 2 protein protein.
          Length = 549

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 257 QIENTNPHYQNIVRRIHCQLGKCISIGTIPNILQHCIKNHLFCSHPPLT 403
           ++E  NP+ Q+I+  +  ++G+C +   +P   Q+  KN L     PLT
Sbjct: 130 ELEEQNPNVQDILGELREKVGECEASAMLPLECQYLNKNALTTLAGPLT 178


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,555,872
Number of Sequences: 237096
Number of extensions: 2029466
Number of successful extensions: 6867
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6867
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)