Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0950
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical pr...    29   4.9  
U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine rec...    28   6.4  
Z81575-8|CAB04634.1|  433|Caenorhabditis elegans Hypothetical pr...    28   8.5  
U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical
           protein ZC155.3 protein.
          Length = 845

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 690 WGNTGLKFLATYANSTNSSSFLQTVDY 610
           WGN   KF + +ANS   S FL ++DY
Sbjct: 388 WGNKEAKFFSKFANSIGISMFL-SLDY 413


>U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine
           receptor, class w protein71 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -1

Query: 642 NSSSFLQTVDYLFPHGCLSYISWYCVICCNLSTLCFSLKS 523
           ++SS+L   +Y+  +G +    +YC++  + S +CF+L S
Sbjct: 288 SASSYL---NYVIGYGSVFISFFYCIVATSHSVICFALSS 324


>Z81575-8|CAB04634.1|  433|Caenorhabditis elegans Hypothetical
           protein R08H2.9 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 308 CQLGKCISIGTIPNILQH 361
           C+L KC+ +G  PN +QH
Sbjct: 141 CRLQKCLKVGMDPNAVQH 158


>U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical
           protein F35C8.5 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 633 SFLQTVDYLFPHGCLSYISWYCV 565
           +F+ T+ ++FP  CL+Y  W+ +
Sbjct: 190 TFITTIPWIFPTHCLTYWIWFFI 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,139,190
Number of Sequences: 27780
Number of extensions: 334013
Number of successful extensions: 853
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)