Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0950
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23470.1 68416.m02957 cyclopropane-fatty-acyl-phospholipid sy...    28   7.9  

>At3g23470.1 68416.m02957 cyclopropane-fatty-acyl-phospholipid
           synthase family protein similar to cyclopropane synthase
           [Sterculia foetida] GI:21069167; contains Pfam profile
           PF02353: Cyclopropane-fatty-acyl-phospholipid synthase
          Length = 406

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = -1

Query: 663 ATYANSTNSSSFLQTVDYLFPHGCLSYISWYCVICCNLSTLCFSLKSGEIAG----QVLR 496
           A Y  S  +S F+   +Y+FP GCL  ++       + S LC  +++ E  G      LR
Sbjct: 277 ALYDESRLTSGFI--TEYIFPGGCLPSLARVTSAMASSSRLC--IENVENIGIHYYHTLR 332

Query: 495 C*QPNLLTNMRPTV 454
           C + N L   +  +
Sbjct: 333 CWRKNFLERQKQII 346


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,853,679
Number of Sequences: 28952
Number of extensions: 297051
Number of successful extensions: 647
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)