Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0949
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0483 - 8804021-8804485 47 1e-05
03_02_0484 + 8805053-8805538 47 2e-05
03_02_0478 + 8775892-8776377 46 2e-05
03_02_0485 - 8808139-8808618 45 6e-05
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 45 8e-05
01_01_0229 - 1943473-1943922 45 8e-05
01_01_0231 + 1951047-1951499 44 1e-04
01_01_0227 + 1933247-1933699 41 0.001
02_02_0077 - 6586638-6587165 40 0.003
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 39 0.005
02_01_0222 + 1450233-1450766 37 0.020
11_02_0041 - 7669692-7670312 33 0.25
06_01_1017 - 7951985-7952425 33 0.33
04_04_1356 + 32854585-32854832,32854948-32855148,32855270-328554... 32 0.43
03_05_0543 - 25404630-25405408,25405461-25405605 32 0.43
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 31 1.00
02_01_0760 - 5639315-5639685,5640072-5640360 31 1.00
12_02_1174 - 26696869-26698191 30 2.3
11_05_0004 - 18269416-18269473,18270319-18270509,18271061-182720... 29 3.0
05_07_0296 - 29061900-29061923,29062026-29062440,29062529-290625... 29 3.0
03_02_0320 + 7437528-7437623,7437725-7437772,7438885-7438994,743... 29 3.0
12_01_0946 + 9376037-9376318 29 5.3
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228... 28 7.0
12_02_0634 + 21416205-21416954 28 9.3
>03_02_0483 - 8804021-8804485
Length = 154
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Frame = +3
Query: 285 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 440
DV EE+ V+ DG V+ + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 441 TVESRLSSDGVLTVIAPRTPAATKNERAVPIT 536
+++ + +GVLTV P+ + +++ IT
Sbjct: 123 QIKASM-ENGVLTVTVPKEEPKKPDVKSIQIT 153
>03_02_0484 + 8805053-8805538
Length = 161
Score = 46.8 bits (106), Expect = 2e-05
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Frame = +3
Query: 285 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 440
DV EE+ V+ DG V+ + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 441 TVESRLSSDGVLTVIAPRTPAATKNERAVPIT 536
+++ + +GVLTV P+ + +++ +T
Sbjct: 130 QIKASM-ENGVLTVTVPKEEPKKPDVKSIQVT 160
>03_02_0478 + 8775892-8776377
Length = 161
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Frame = +3
Query: 285 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 440
DV EE+ V+ DG ++ + G+ EE+ D+ + R +F RR+ LP+N P+
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 441 TVESRLSSDGVLTVIAPRTPAATKNERAVPIT 536
+++ + +GVLTV P+ A + +++ I+
Sbjct: 130 QIKASM-ENGVLTVTVPKEEAKKPDVKSIQIS 160
>03_02_0485 - 8808139-8808618
Length = 159
Score = 45.2 bits (102), Expect = 6e-05
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Frame = +3
Query: 285 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 440
DV EE+ V+ DG ++ + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 441 TVESRLSSDGVLTVIAPRTPAATKNERAVPIT 536
+++ + +GVLTV P+ + +++ I+
Sbjct: 128 QIKASM-ENGVLTVTVPKEEPKKPDVKSIQIS 158
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 44.8 bits (101), Expect = 8e-05
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Frame = +3
Query: 219 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHG 383
A AN + T F+ D+ EE+ V+ +G V+V + E++ D+
Sbjct: 39 AFANARIDWKETPESHVFKA--DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWH 96
Query: 384 YISR---QFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPIT 536
+ R QF RR+ LPEN D V++ L +GVLTV P+ +A+ I+
Sbjct: 97 RVERSSGQFMRRFRLPENAKVDQVKAGL-ENGVLTVTVPKAEVKKPEVKAIEIS 149
>01_01_0229 - 1943473-1943922
Length = 149
Score = 44.8 bits (101), Expect = 8e-05
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Frame = +3
Query: 219 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHG 383
A AN V T F+ D+ EE+ V+ +G V+V + E++ D+
Sbjct: 38 AFANARVDWKETPESHVFKA--DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWH 95
Query: 384 YISR---QFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPIT 536
+ R QF RR+ LPEN D V++ + +GVLTV P+ +A+ I+
Sbjct: 96 RVERSSGQFMRRFRLPENAKVDQVKASM-ENGVLTVTVPKAEVKKPEVKAIEIS 148
>01_01_0231 + 1951047-1951499
Length = 150
Score = 44.0 bits (99), Expect = 1e-04
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Frame = +3
Query: 219 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHG 383
A AN + T F+ D+ EE+ V+ +G V+V + E++ D+
Sbjct: 39 AFANARIDWKETPESHVFKA--DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWH 96
Query: 384 YISR---QFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPIT 536
+ R QF RR+ LPEN D V++ + +GVLTV P+ +A+ I+
Sbjct: 97 RVERSSGQFMRRFRLPENAKVDQVKAGM-ENGVLTVTVPKAEVKKPEVKAIEIS 149
>01_01_0227 + 1933247-1933699
Length = 150
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +3
Query: 345 VEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERA 524
V+GK++ER S +F RR+ LP D V + + +GVLTV P+ +A
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKEETKKPQLKA 145
Query: 525 VPIT 536
+PI+
Sbjct: 146 IPIS 149
>02_02_0077 - 6586638-6587165
Length = 175
Score = 39.5 bits (88), Expect = 0.003
Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 14/147 (9%)
Frame = +3
Query: 147 PDDLLTAVITPTMSRDYYRPWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKT 326
PD+L + PT R Y R + MA DV S + +D+ +P ++ V+
Sbjct: 25 PDELERQLNPPT--RAYVRDRRAMANTPMDVKELRASGA--LVLAVDMPGVAPADVRVEV 80
Query: 327 ADGYVIVEGKHEERQ----DEHG----YISRQ-----FTRRYALPENCNPDTVESRLSSD 467
DG V+ R D+ G Y+ + F RR+ LPE+ + D V + D
Sbjct: 81 EDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEY-KD 139
Query: 468 GVLTV-IAPRTPAATKNERAVPITQTG 545
GVLTV + + P K R V + G
Sbjct: 140 GVLTVTVDKKPPPEPKKPRVVEVKVAG 166
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 38.7 bits (86), Expect = 0.005
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Frame = +3
Query: 204 PWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDE-- 377
P + +A + + + + ++ D+ S EE+ V D +++ G+H++ + E
Sbjct: 122 PRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGA 181
Query: 378 ----HGYISRQ----FTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATK 512
G+ + + R ALP+ C+ V + L +GVL V P+T K
Sbjct: 182 EGSGDGWWKERSVSSYDMRLALPDECDKSKVRAEL-KNGVLLVTVPKTEVERK 233
>02_01_0222 + 1450233-1450766
Length = 177
Score = 36.7 bits (81), Expect = 0.020
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Frame = +3
Query: 306 EEISVKTADGYVI-VEGKHEERQDEHGY-------ISRQFTRRYALPENCNPDTVESRLS 461
EE+ V+ + V+ + G+ +E G S +F R LP N N D V + L
Sbjct: 93 EEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALD 152
Query: 462 SDGVLTVIAPRTPAATKNERAVPIT 536
+ GVLT+ P+ + R +PIT
Sbjct: 153 N-GVLTITIPKDNDRKPHARIIPIT 176
>11_02_0041 - 7669692-7670312
Length = 206
Score = 33.1 bits (72), Expect = 0.25
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 396 QFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNE-RAVPITQTG 545
+F RR+ +P + V +RL DGVLTV P+ P E R V I G
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVPKVPGHRGREPRVVAIDGAG 190
>06_01_1017 - 7951985-7952425
Length = 146
Score = 32.7 bits (71), Expect = 0.33
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +3
Query: 312 ISVKTADGYVIVEGKHEERQDEHGYISR----QFTRRYALPENCNPDTVESRLSSDGVLT 479
++V+ A + E + E +D +++ +F R ALP + + + + + GVLT
Sbjct: 65 LTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDN-GVLT 123
Query: 480 VIAPRTPAATKNERAVPI 533
V+ P+ PA + R PI
Sbjct: 124 VVVPKEPAPAR-PRTRPI 140
>04_04_1356 +
32854585-32854832,32854948-32855148,32855270-32855447,
32856389-32856651,32856800-32857040,32857317-32858456,
32858856-32858993
Length = 802
Score = 32.3 bits (70), Expect = 0.43
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Frame = -2
Query: 659 QIKLTHATLF*FTAFRESLFCFVALNFRSGLLNLLPDRTGLSDGNSSLVLRGSRSPGSDH 480
+ ++ +F FT++ +F + L SGL + TG + G +L GS+S DH
Sbjct: 467 EFHISSILVFFFTSYFLGIFSY-GLALPSGLF-VPVILTGATYGRLVGMLIGSQST-LDH 523
Query: 479 GQHAVRGQPRF--DSVRVAVFRQSVTPRELTRDVAMLVLPLLVLTFDDDVA 333
G AV G S+R+ V V ELT ++ ML L +LVL VA
Sbjct: 524 GLFAVLGSAALLGGSMRMTV-SVCVVILELTNNLLMLPLVMLVLLISKTVA 573
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 32.3 bits (70), Expect = 0.43
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Frame = +3
Query: 264 DKFQVNLDVQHFSPEEISVKTAD-GYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 440
+ ++LD F EEI V + G++ G ER SR F + + LP +CN D
Sbjct: 39 NSIHLSLDQLGFKREEIRVLVDNHGHLRTRG---ERPVAGNRWSR-FQKDFQLPADCNVD 94
Query: 441 TVESRLSSDGVLTVIAPRTPA-ATKNERAVPIT--QTGPVRKEIKEPTA 578
+ ++ ++ + + +TP+ T + P+T P + E + P A
Sbjct: 95 GIRAKFENEALTITLPKKTPSPLTPSPTPSPVTPPPQQPPQPEPRRPPA 143
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 31.1 bits (67), Expect = 1.00
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +3
Query: 372 DEHGYISRQFTRRYA-LPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITQTGP 548
D+ + + FTR Y+ N RL + ++ P + K++ V T P
Sbjct: 323 DDISTVCKWFTREYSDTTYGKNAQLAAKRLKATQPIST-QPDKEESNKDDLFVEPIYTIP 381
Query: 549 VRKEIKEPTAEVESNETK 602
+KE +PT ++ESN T+
Sbjct: 382 AKKEEVQPTKDLESNSTE 399
>02_01_0760 - 5639315-5639685,5640072-5640360
Length = 219
Score = 31.1 bits (67), Expect = 1.00
Identities = 22/109 (20%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Frame = +3
Query: 231 RDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGK-----HEER-QDEHG--Y 386
R + + +++++++ +V +++ V DG + + G+ E+R +D G +
Sbjct: 111 RPLTGKVREDEERYRLRFEVPGLGKDDVRVYVDDGVLAIHGEKRDVVEEDRGRDGDGECW 170
Query: 387 ISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPI 533
+ + LPE+ + + + + DGVL V PR+P ++ V +
Sbjct: 171 AAATYHAGLLLPEDAVAEGITAEVR-DGVLHVTVPRSPERKRSVTEVKV 218
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.9 bits (64), Expect = 2.3
Identities = 25/101 (24%), Positives = 42/101 (41%)
Frame = +3
Query: 276 VNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESR 455
V + + F E++ V+ D + ++ E G +F + LP+NC+ D V +R
Sbjct: 26 VEIALPGFRKEQVRVQV-DNHGMLRATGERPPAARGGRWVRFKKDLRLPDNCDADAVRAR 84
Query: 456 LSSDGVLTVIAPRTPAATKNERAVPITQTGPVRKEIKEPTA 578
D L + P A AV + ++ E K P A
Sbjct: 85 F-DDHKLIITLPLVAA------AVDVDESSATSPEFKTPPA 118
>11_05_0004 -
18269416-18269473,18270319-18270509,18271061-18272004,
18272083-18272254,18272332-18272407,18272498-18272617,
18272795-18272959,18273048-18273138,18273673-18273757,
18273873-18274043,18274151-18274207,18274290-18274385,
18275223-18275365,18275464-18275530
Length = 811
Score = 29.5 bits (63), Expect = 3.0
Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 6/153 (3%)
Frame = +3
Query: 165 AVITPTMSRDYYRPWKQMAMANRDVGSTITSNKDKFQVNLDVQ-HFSPEEISVKTADGYV 341
AV T TM YY+P A + S K + + + + F EE + G +
Sbjct: 278 AVNTGTMFTVYYKPRTSPAEFVVPYDRYMESLKQNYSIGMRFKMRFEGEEAPEQRFTGTI 337
Query: 342 IVEGKHEER---QDEHGYISRQFTRRYALP--ENCNPDTVESRLSSDGVLTVIAPRTPAA 506
+ G + + + + ++ ++P E +P +E +S V + PRT
Sbjct: 338 VGMGDSDPAGWPESKWRSLKVRWDEASSIPRPERVSPWQIEPAVSPPPVNPLPVPRTKRL 397
Query: 507 TKNERAVPITQTGPVRKEIKEPTAEVESNETKQ 605
N A+P + ++ + E E N T++
Sbjct: 398 RPNATALPADSSAIAKEAATKVVVESEPNGTQR 430
>05_07_0296 -
29061900-29061923,29062026-29062440,29062529-29062566,
29062689-29062741,29062851-29063034,29064486-29064669,
29064761-29064916,29064998-29065173,29065277-29065454,
29066015-29066421
Length = 604
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Frame = +3
Query: 321 KTADGYVIVEGKHEERQDEHGYISRQFTRRYALPE------NCNPDTVESRLSSDGV-LT 479
+TA GY+ + E R+D H + TR+ + + C P T+++ + G+ +
Sbjct: 343 RTAVGYLDITRLSELRRDAHPSVFTPSTRKRDVKKLVQEHSPCQPSTLQADAYTTGLSMK 402
Query: 480 VIAPRTPAATKNERAVPITQTGPVRKEIKE 569
I R N+ VP T+ + KE KE
Sbjct: 403 EIERRRKIGAANKGKVPWTKGRKLSKEHKE 432
>03_02_0320 +
7437528-7437623,7437725-7437772,7438885-7438994,
7439651-7439735,7439839-7440115,7440296-7440454,
7440563-7440666,7440930-7441168,7441265-7441583,
7441665-7442069,7442157-7442294,7442376-7442555
Length = 719
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 198 YRPWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADG 335
Y+ W++ AMA + + ++ VN D + SP + T DG
Sbjct: 214 YKKWERAAMAGVSLVADAAEELERNTVNADARMLSPSSSNACTVDG 259
>12_01_0946 + 9376037-9376318
Length = 93
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +3
Query: 168 VITPTMSRDYYRPWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGY 338
++T T S RPWK N D T T + + + +++ +P +I + GY
Sbjct: 2 IVTTTSSTTTTRPWKTPTRENHDNQHTPTRSHN---IQANIRQDTPPDIDFRDRHGY 55
>03_06_0123 -
31821915-31822094,31822187-31822324,31822413-31822817,
31822897-31823212,31823305-31823543,31823800-31823903,
31823987-31824145,31824326-31824510,31825318-31825427,
31826900-31826947,31827047-31827241,31827354-31827422,
31829521-31829620,31829879-31829940
Length = 769
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 198 YRPWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTAD 332
Y+ W++ AMA + + ++ VN+D + SP +V T D
Sbjct: 265 YKKWERDAMAGVSLVADAAEELERNTVNVDARTLSPSSNNVCTVD 309
>12_02_0634 + 21416205-21416954
Length = 249
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 528 EQLARSSWQPESWERSRSARRQRTTEIRQCQG 433
+ LAR QPE R R R T R+C G
Sbjct: 60 DALARLPGQPEEMSTRRKVRPARATVFRRCSG 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,441,843
Number of Sequences: 37544
Number of extensions: 388769
Number of successful extensions: 1392
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1391
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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