Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0949
(759 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 68 7e-12
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 67 1e-11
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 60 3e-09
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 59 3e-09
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 59 3e-09
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 58 1e-08
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 1e-08
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 56 2e-08
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 47 1e-05
SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38) 33 0.25
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 33 0.33
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 31 1.0
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 30 2.3
SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 4.1
SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047) 29 5.4
SB_9039| Best HMM Match : M (HMM E-Value=0.00046) 29 5.4
SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17) 28 9.5
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 28 9.5
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 68.1 bits (159), Expect = 7e-12
Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Frame = +3
Query: 264 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 440
DK ++ LDV+++ PEEIS+K G + ++GKH+ + EHGY + +F R Y LP+ +
Sbjct: 38 DKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVS 96
Query: 441 TVESRLSSDGVLTVIA 488
TV SR++ DG+L + A
Sbjct: 97 TVSSRITGDGLLHIEA 112
Score = 32.7 bits (71), Expect(2) = 0.060
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 405 RRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPI 533
R + LP++ + D++ SRL DG L + A R T +ER V I
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKRILHPTPHERQVNI 203
Score = 21.4 bits (43), Expect(2) = 0.060
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 267 KFQVNLDVQHFSPE 308
+F V LDV FSP+
Sbjct: 142 RFTVTLDVSSFSPD 155
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 67.3 bits (157), Expect = 1e-11
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Frame = +3
Query: 264 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 440
DKFQ+ LDV+ F PEEI+ K +G + V G + + E G+ S++F R Y LPE +
Sbjct: 4 DKFQIATLDVREFKPEEITCKVENGKIKVSGL-QRHESEEGFDSKEFRRCYNLPEGVDES 62
Query: 441 TVESRLSSDGVLTVIA-PRTPAATKNERAVPITQ 539
++ +R++ DG+L V A ++P AT +A P T+
Sbjct: 63 SISTRIAEDGMLHVEALKKSPPATTENKA-PATK 95
Score = 61.7 bits (143), Expect = 6e-10
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Frame = +3
Query: 210 KQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYI 389
K+ A + + T + KF + LDV F PEE+ VK + V + E +EHG+
Sbjct: 80 KKSPPATTENKAPATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFF 137
Query: 390 S-RQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTP 500
+ RQF R + LP + DT+ RL DGVL + A + P
Sbjct: 138 TARQFNRHFVLPREVDMDTLVPRLGKDGVLYIEADKRP 175
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 59.7 bits (138), Expect = 3e-09
Identities = 29/69 (42%), Positives = 44/69 (63%)
Frame = +3
Query: 282 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 461
LDV+ + PEEIS K +G V V+G+H + E G+ ++F R + LPE +P+ V SR+S
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGIDPENVTSRIS 70
Query: 462 SDGVLTVIA 488
+ G L + A
Sbjct: 71 NHGHLHIEA 79
Score = 52.8 bits (121), Expect = 3e-07
Identities = 26/83 (31%), Positives = 44/83 (53%)
Frame = +3
Query: 255 SNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCN 434
+ +DKF + +DV F PE I V+ ++V HE + H Y + F R++ LP +
Sbjct: 93 AKEDKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQFVLPREVD 151
Query: 435 PDTVESRLSSDGVLTVIAPRTPA 503
D++ +RL +G L A ++ A
Sbjct: 152 MDSLTTRLDKEGKLHFEAKKSVA 174
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 431
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R +ALPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGV 60
Query: 432 NPDTVESRLSSDGVLTVIA 488
V++R+S+ G L + A
Sbjct: 61 EASNVKTRISNHGQLHIEA 79
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = +3
Query: 219 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 398
A+ D G + DKF + +DV F P+ I V+ ++V HE + H Y +
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 399 FTRRYALPENCNPDTVESRLSSDGVL 476
F R++ LP + D++ +RL +G L
Sbjct: 141 FNRQFVLPREVDMDSLTTRLDKEGKL 166
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 431
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R +ALPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGV 60
Query: 432 NPDTVESRLSSDGVLTVIA 488
V++R+S+ G L + A
Sbjct: 61 EASNVKTRISNHGQLHIEA 79
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = +3
Query: 219 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 398
A+ D G + DKF + +DV F P+ I V+ ++V HE + H Y +
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 399 FTRRYALPENCNPDTVESRLSSDGVL 476
F R++ LP + D++ +RL +G L
Sbjct: 141 FNRQFVLPREVDMDSLTTRLDKEGKL 166
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 431
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 60
Query: 432 NPDTVESRLSSDGVLTVIA 488
V++R+S+ G L + A
Sbjct: 61 EASNVKTRISNHGQLHIEA 79
Score = 54.8 bits (126), Expect = 7e-08
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Frame = +3
Query: 264 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 440
D+ ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEAS 297
Query: 441 TVESRLSSDGVLTVIA 488
V++R+S+ G L + A
Sbjct: 298 NVKTRISNHGQLHIEA 313
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = +3
Query: 219 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 398
A+ D G + DKF + +DV F P+ I V+ ++V HE + H Y +
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 399 FTRRYALPENCNPDTVESRLSSDGVL 476
F R++ LP + D++ +RL +G L
Sbjct: 141 FNRQFVLPREVDMDSLTTRLDKEGKL 166
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = +3
Query: 219 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 398
A+ D G + DKF + +DV F P+ I V+ ++V HE + H Y +
Sbjct: 316 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 374
Query: 399 FTRRYALPENCNPDTVESRLSSDGVL 476
F R++ LP + D++ +RL +G L
Sbjct: 375 FNRQFVLPREVDMDSLTTRLDKEGKL 400
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 431
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 60
Query: 432 NPDTVESRLSSDGVLTVIA 488
V++R+S+ G L + A
Sbjct: 61 EASNVKTRISNHGQLHIEA 79
Score = 56.4 bits (130), Expect = 2e-08
Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 1/165 (0%)
Frame = +3
Query: 219 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 398
A+ D G + DKF + +DV F P+ I V+ ++V HE + H Y +
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 399 FTRRYALPENCNPDTVESRLSSDGVLTVIA-PRTPAATKNERAVPITQTGPVRKEIKEPT 575
F R++ LP + D++ +RL +G L A R A R + + + R E
Sbjct: 141 FNRQFVLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKVLKDNISRNSSSEIC 200
Query: 576 AEVESNETKQ*LSERCESKKCSVC*FYLHSSCVLVRLIALSYLYF 710
+ ET + S K V SSC+ L LS YF
Sbjct: 201 PSCRALETSSLIEFFSLSAKTIV------SSCLATLLNRLSVTYF 239
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +3
Query: 249 ITSNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPE 425
+ +N++K ++ LDV+ + PEEIS K +G V V+G+H + G+ ++F R + LPE
Sbjct: 1 MANNENKLEIAKLDVREYRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPE 59
Query: 426 NCNPDTVESRLSSDGVLTVIA 488
V++R+S+ G L + A
Sbjct: 60 GVEASNVKTRISNHGQLHIEA 80
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/79 (32%), Positives = 42/79 (53%)
Frame = +3
Query: 240 GSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYAL 419
G+ S DKF + +DV+ F PE I V+ ++V HE + H Y + F R++ L
Sbjct: 89 GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFIL 147
Query: 420 PENCNPDTVESRLSSDGVL 476
P + D++ +RL +G L
Sbjct: 148 PREVDMDSLTTRLDKEGKL 166
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +3
Query: 210 KQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYI 389
K+ A ++ S T + KF + LDV F PEE+ VK + V + E +EHG+
Sbjct: 8 KKAPPATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFF 65
Query: 390 -SRQFTRRYALPE 425
+RQF R + LP+
Sbjct: 66 TARQFNRHFVLPQ 78
>SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38)
Length = 468
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 429 CNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITQTGPVRKEIKEPTAEVESN 593
CNPD+ ++ ++S AP TP AT V T T PV + + E + N
Sbjct: 77 CNPDSGQTTVTSTAATPETAPPTPPATGAPPEVTTTPTPPVTTQQADNYQEYQLN 131
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 32.7 bits (71), Expect = 0.33
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 354 KHEERQDEHGYISRQFTRRYAL 419
KHEER+D HGY+ + T ++AL
Sbjct: 72 KHEEREDRHGYLKDKVTLQHAL 93
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 438 DTVESRLSSDGVLTVIAPRTPAATKNERAVPITQT-GPVRKEIKEPTAEVESNETK 602
D V ++L+ V TV+ P TP T + PI T PVR E+++ A+ ++ K
Sbjct: 329 DGVITKLTDASVYTVVIPTTPRTTTAVTS-PIPSTKSPVRIEVRKQKAKAPADTNK 383
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 348 EGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLT 479
E K+EE DEHG I R+ T+ TV ++ DGV T
Sbjct: 1187 ETKYEEYVDEHGQIIRRTTKVKHTAVKQERTTVTKTVTRDGVTT 1230
>SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +3
Query: 318 VKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPE 425
+++A GYV+ G H + + G + + R LP+
Sbjct: 10 IRSARGYVVTSGSHTSKSEVRGIMEETCSNRNPLPQ 45
>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1498
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 594 ETKQ*LSERCESKKCSVC 647
E K+ LS RCES KC +C
Sbjct: 1244 ELKEHLSNRCESLKCKIC 1261
>SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047)
Length = 841
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 549 PDRFE*WEQLARSSWQPESWERSRS 475
PD+ E W +L R W P S ER+++
Sbjct: 792 PDQEEVWRRLPRFHWAPRSHERAQT 816
>SB_9039| Best HMM Match : M (HMM E-Value=0.00046)
Length = 716
Score = 28.7 bits (61), Expect = 5.4
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
Frame = +3
Query: 141 LTPDDLLTAVITPTM---SRDYYRPWKQMAMANRDVG-STITSNKDKFQVNLDVQHFSPE 308
+T D L V TP M S D M M + DV ST D V + H + +
Sbjct: 225 MTMDSLDVEVSTPHMTMDSLDVEVNTPHMTMDSLDVEVSTPHMTMDSLDVEDNTPHMTMD 284
Query: 309 EISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRL 458
+ V+ ++ ++ E Q+E ++ +YA N + E++L
Sbjct: 285 SLDVEVNTPHMTMDSLDAEMQEEFLQKRQEMEAKYAEQFNAAKEEFEAKL 334
>SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 668
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = +1
Query: 541 PVRSGRRLRSPLRKLRATKQNNDSRNAVNQKSVACVNFI 657
P+RS + LRS + R++ + ++S +AVNQ+ + +++
Sbjct: 600 PLRSVKPLRSSSQATRSSSEPDESSDAVNQQLIHATDWL 638
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 447 ESRLSSDGVLTVIAPRTPAATKNERAVPITQTGPVRKEIKEPTAEVESNE 596
+S SS+ AP+ PAA +N +A PV+K K ++E ES+E
Sbjct: 48 DSSSSSESDSEEEAPKKPAAKQNGKAKKQNGKAPVKKAAKS-SSESESDE 96
>SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)
Length = 809
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 702 NTIKRSVSQARTRNANKINTRYTFLIHSVPRVIVLFRC 589
+ I SV+ T + R+T L+ S RVI++F C
Sbjct: 333 SAIVSSVASGNTSETRQRGLRHTLLMMSAVRVIIMFFC 370
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +1
Query: 73 CHCCHSSWDTNLTA--FAIRTS--GWRLLLTIS*R--PSSRQRCPEITTG 204
C CCH S+ ++ +A+ + G L+ R PS+R+RCP+ TG
Sbjct: 2062 CTCCHKSYHVGISCGDYALSKTEIGQEHLVEKWMREDPSNRKRCPKCRTG 2111
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,172,285
Number of Sequences: 59808
Number of extensions: 433143
Number of successful extensions: 1529
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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