Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0948
         (712 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0AMD6 Cluster: Complete genome; n=1; Listeria welshime...    33   9.2  
UniRef50_Q4YRK7 Cluster: Putative uncharacterized protein; n=1; ...    33   9.2  

>UniRef50_A0AMD6 Cluster: Complete genome; n=1; Listeria welshimeri
           serovar 6b str. SLCC5334|Rep: Complete genome - Listeria
           welshimeri serovar 6b (strain ATCC 35897 / DSM 20650
           /SLCC5334)
          Length = 42

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = -2

Query: 390 KFSVMTILKLMRSRKPTNIFLKKTIIFD 307
           K S++  +KL++S+K TN+ LK+ II+D
Sbjct: 14  KRSILPYIKLLKSKKVTNLHLKERIIYD 41


>UniRef50_Q4YRK7 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 237

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 598 VTKLTNVSTYKSDAGVETIKLELQENLISWISN 500
           V K+ N +TY+ ++ +E  K +L+ N+I  + N
Sbjct: 96  VNKINNTNTYEDNSSIERTKFDLENNIIKTVDN 128


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 634,848,558
Number of Sequences: 1657284
Number of extensions: 11434075
Number of successful extensions: 24497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24494
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57024798702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)