Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0947
(709 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa... 86 5e-18
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc... 64 2e-11
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 29 0.65
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 28 1.1
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.5
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 4.6
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ... 25 8.0
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 25 8.0
>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
Uch1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 85.8 bits (203), Expect = 5e-18
Identities = 61/185 (32%), Positives = 98/185 (52%), Gaps = 6/185 (3%)
Frame = +2
Query: 167 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 346
PLE+ P+VL +LQK+GV + ++ D+ L+ E ++PRPV +++ +FP S +K
Sbjct: 4 PLENTPEVLEPYLQKIGVQDA-SVFDLFSLE-EIPEYIPRPVHALLFVFPSSGTKTIYKG 61
Query: 347 TEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAK 523
+ IL K S + + Q I NACGTI L+H+V+N ++++ ++ + A+
Sbjct: 62 SR---ILPKD---SDKVLWYPQTIPNACGTIGLLHAVSNGELRRKVNENDFIKSLIRTAE 115
Query: 524 GLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAED-PVNHHFISFV----QKDGALYE 688
G R KL+E S+ + H A S ED + HFI FV + D YE
Sbjct: 116 GSSIEERAKLIEDSKELEALHAAFAGPPLEVEGSEEDVETDLHFICFVKGKSKDDNHFYE 175
Query: 689 LNGRK 703
L+GR+
Sbjct: 176 LDGRQ 180
>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
Uch2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 63.7 bits (148), Expect = 2e-11
Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 5/184 (2%)
Frame = +2
Query: 170 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 349
+ES+ V ++ LGV + + ++ LD ++L P + ++ LF + + T
Sbjct: 6 IESDAGVFTDLIENLGVKDV-EVDELYSLDVDSLRQFP-DIYGIIFLFKWNSKVDKPDGT 63
Query: 350 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 529
+ + + NIF+ KQ I+NAC T AL+ + N++D I+L + +F + +K L
Sbjct: 64 MDYDSMD-------NIFFAKQVINNACATQALLSVLLNHSDEIDLGT-TLSEFKDFSKTL 115
Query: 530 DATARGKLLEKSEGIINAHKELAQEG-----QTNTPSAEDPVNHHFISFVQKDGALYELN 694
+G+ L SE I H A+ + + ED V +HFI++ + YEL+
Sbjct: 116 PPELKGEALGNSEHIRCCHNSFARSDPFISEEVRAATDEDEV-YHFIAYTNINNVFYELD 174
Query: 695 GRKA 706
G +A
Sbjct: 175 GLQA 178
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 29.1 bits (62), Expect = 0.65
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Frame = +2
Query: 122 QLFYRVTEMATETLVPLESNPDVLNKFLQ-------KLGVPNKWNI-VDVMGLDPETLSW 277
Q+F ++ +E +PLES PD L K + K+G W I V V PE W
Sbjct: 312 QMFCYFSQHVSEWGIPLESAPDALEKLINYTVDDAGKIGAYTHWPIEVRVCAPTPEDECW 371
Query: 278 V 280
+
Sbjct: 372 L 372
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 72 LRRYFFICHC-RCTGNLLSYFTE*LKWRPKL 161
L++YFF C+C RC + + T+ KW +L
Sbjct: 242 LKKYFFSCYCPRCENDHTTKETDGSKWMGRL 272
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = +2
Query: 575 INAHKELAQEGQTNTPSAEDPVNHHFISFVQ 667
++A + L ++ +++T + E+PV+HH S V+
Sbjct: 337 LSARRALFEKKESSTKNVENPVSHHLKSPVR 367
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -1
Query: 175 FKRD*SFGRHFSHSVK*LSRLPVHRQ*QMKKYLRRFTIELKTYQIV 38
F+R+ S R+F++ V + RL R+ ++ YL + T L Y ++
Sbjct: 554 FEREKSTNRNFANYVHEVERLRESRKLELNGYLTKPTTRLARYPLL 599
>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 8.0
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +2
Query: 461 NNTDIIELSDGHMQ-KFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDP 637
+NT+++ + ++ K ++ K +D + G L + E +H + GQ +DP
Sbjct: 31 SNTNMLSTEENIVKAKAVSRKKPVDVSYAG--LARHE----SHVDTDYHGQALNTDNQDP 84
Query: 638 VNHHFISFVQKDGALYE 688
N+ SFV K+ LYE
Sbjct: 85 KNYQARSFV-KENELYE 100
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 617 TPSAEDPVNHHFISFVQKDGALYELNGRKAF 709
T A+ N FI +++ A+Y+ NG+ AF
Sbjct: 168 TAKAKYATNEFFIHVLERVSAVYQPNGKLAF 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,452
Number of Sequences: 5004
Number of extensions: 63472
Number of successful extensions: 200
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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