Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0947
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0697 + 27331643-27331693,27331798-27331917,27332007-273320... 126 1e-29
02_05_0168 + 26423464-26423790,26423828-26423941,26424366-264244... 80 2e-15
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086... 66 3e-11
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 64 8e-11
02_05_1262 + 35312313-35312343,35312840-35312886,35313614-353136... 58 5e-09
09_04_0362 - 16953108-16953155,16953478-16953562,16953626-169537... 30 2.1
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 29 4.8
05_01_0546 - 4769565-4769612,4769873-4770037,4770192-4770200,477... 28 8.4
>04_04_0697 +
27331643-27331693,27331798-27331917,27332007-27332057,
27332682-27332787,27333218-27333276,27333372-27333446,
27333909-27333957,27334064-27334140,27334400-27334483
Length = 223
Score = 126 bits (305), Expect = 1e-29
Identities = 65/179 (36%), Positives = 106/179 (59%), Gaps = 1/179 (0%)
Frame = +2
Query: 164 VPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHK 343
+PLE+NP+V+N+F++ LGVP + DV GLD E L+ VP+PVL+V+LL+P D +
Sbjct: 6 LPLEANPEVMNQFMRGLGVPAEAGFCDVYGLDDEMLAMVPQPVLAVILLYP-QDRKKESV 64
Query: 344 KTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEA 520
+ + + SK ++S N+++ KQ I NACGT+ ++H++ N I+L +G + +F +
Sbjct: 65 ASPSSTVESK--KLSKNVYFTKQTIGNACGTVGIIHAIGNALSRIKLVEGSYFDRFYKQT 122
Query: 521 KGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELNG 697
+D R LE+ E + AH G T A+D V H++ F D ++EL+G
Sbjct: 123 ADMDPAQRASFLEEDEEMEKAHSVAVSAGDT---EAKDGVIEHYVCFSCVDDEIFELDG 178
>02_05_0168 +
26423464-26423790,26423828-26423941,26424366-26424448,
26424756-26424804,26425789-26425894,26426460-26426518,
26426604-26426678,26427112-26427160,26427253-26427329,
26427662-26427744,26427852-26427867
Length = 345
Score = 79.8 bits (188), Expect = 2e-15
Identities = 37/110 (33%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Frame = +2
Query: 380 EVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAKGLDATARGKLL 556
++S +++ KQ + NACGT+ ++H++ N ++L +G + +F + +D R L
Sbjct: 192 DLSKRVYFTKQTVGNACGTVGVIHAIGNAASKLKLVEGSYFDRFYKQTVDMDPVQRAAFL 251
Query: 557 EKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELNGRKA 706
E+ + + +AH A G T+ A VN HF+ F DG LYEL+GRK+
Sbjct: 252 EEDDEMEDAHSVAASAGDTD---ANVEVNEHFVCFSCVDGELYELDGRKS 298
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +2
Query: 197 KFLQKLGVPN-KWNIVDVMGLDPETLSWVPRPVLSVMLLFPIS 322
+F+ LGV + DV GLD E L+ VP+PVL+V+ L+P++
Sbjct: 65 QFMWGLGVAEGEAQFCDVYGLDDELLAMVPQPVLAVLFLYPLT 107
>04_04_1513 -
34107700-34107765,34108475-34108551,34108640-34108688,
34109144-34109218,34109447-34109554,34109728-34109835,
34110708-34111256
Length = 343
Score = 65.7 bits (153), Expect = 3e-11
Identities = 59/190 (31%), Positives = 82/190 (43%), Gaps = 21/190 (11%)
Frame = +2
Query: 197 KFLQKLGVPNKW-NIVDVMGLDPETLSWVPRPVLSVMLLFP------------------I 319
+ + LGVP DV LD + L VP+PVL+V+ FP +
Sbjct: 139 QLMWSLGVPEDVAEFHDVYSLDADALEMVPQPVLAVVFCFPDPTQLSTIMGFSLYLIYTL 198
Query: 320 SDAYENHKKTEENEILSKGQEVSGNIFYMKQ--NISNACGTIALVHSVANNTDIIELSDG 493
S +L G++ + +F++KQ ++ NACGTIAL+H+V N I L
Sbjct: 199 SPTSVQDASNPSQHLLITGEKET--LFFIKQIESLGNACGTIALLHAVGNAYSEISLCK- 255
Query: 494 HMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKD 673
R LEK + + AH A G T D V H+I FV+ D
Sbjct: 256 ----------------RAVFLEKDDDMARAHLSAASAGDTKL---SDDVEEHYICFVECD 296
Query: 674 GALYELNGRK 703
G LYEL+G K
Sbjct: 297 GTLYELDGMK 306
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 64.5 bits (150), Expect = 8e-11
Identities = 55/180 (30%), Positives = 96/180 (53%), Gaps = 2/180 (1%)
Frame = +2
Query: 170 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 349
+E++P + + LQ++ + + ++ LD + L+ + +PV +++L+ ++ +K
Sbjct: 60 IENDPGIFTELLQQMQLKGL-QVDELYSLDLDALNDL-QPVYGLIVLYK----WQPPEK- 112
Query: 350 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 529
+E I ++ N+F+ KQ I+NAC T A+V SV N+ I LS+ ++K AK L
Sbjct: 113 DERPI----KDPIPNLFFAKQIINNACATQAIV-SVLLNSPGITLSE-ELKKLKEFAKDL 166
Query: 530 DATARGKLLEKSEGIINAHKELAQEG--QTNTPSAEDPVNHHFISFVQKDGALYELNGRK 703
+G + SE I A A+ + S +D +HFIS+V DG LYEL+G K
Sbjct: 167 PPDLKGLAIVNSESIRLASNSFARPEVPEEQKSSVKDDDVYHFISYVPVDGVLYELDGLK 226
>02_05_1262 +
35312313-35312343,35312840-35312886,35313614-35313660,
35313740-35313842,35313924-35314691
Length = 331
Score = 58.4 bits (135), Expect = 5e-09
Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 5/183 (2%)
Frame = +2
Query: 170 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 349
+ES+P V + +Q++ V + ++ LD +++S + RPV ++ LF + +K
Sbjct: 6 IESDPGVFTELIQEMQVKGV-QVEELYSLDVDSISEL-RPVYGLIFLFK----WMAGEKD 59
Query: 350 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 529
E + ++ + N+F+ Q I NAC T A++ + N E+ G L E G
Sbjct: 60 ERPVV----KDPNPNLFFASQVIPNACATQAILSILMNRP---EIDIGPELSNLKEFTGA 112
Query: 530 DAT-ARGKLLEKSEGIINAHKELAQE----GQTNTPSAEDPVNHHFISFVQKDGALYELN 694
A +G + S+ I AH A+ + +D +HFIS++ +G LYEL+
Sbjct: 113 FAPDMKGLAINNSDSIRTAHNSFARPEPFVSDEQRAAGKDDEVYHFISYLPFEGVLYELD 172
Query: 695 GRK 703
G K
Sbjct: 173 GLK 175
>09_04_0362 -
16953108-16953155,16953478-16953562,16953626-16953702,
16954601-16954641,16955140-16955644,16955897-16956316
Length = 391
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 270 SVSGSSPMTSTIFHLFGTPSFCKNLFRTSGLDSRGTKVSVAISVTL 133
S S+P +S++F TP+ NLF TSG T + TL
Sbjct: 230 STPASAPSSSSLFSTPTTPTLSSNLFGTSGSAQLSTPFGTVSTPTL 275
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 311 FPISDAYENHKKTEENEIL-SKGQEVSGNIFYMKQNISNACGTIALVHSVANN 466
+ +SD + +++ EE E+L ++ +E + + +N+S+ C T+ + V N+
Sbjct: 2692 YRVSDGKDPYEQMEEEELLRNRLEESEQDRSKLAENLSSLCATVLKIAGVRNH 2744
>05_01_0546 -
4769565-4769612,4769873-4770037,4770192-4770200,
4770412-4770680,4772931-4772994
Length = 184
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 131 YRVTEMATETLVPLESNPDVLNKFLQKLGVPNKW 232
+R T M L+PL + P +NKF Q L +W
Sbjct: 50 WRRTRMQPMLLLPLRARPRSINKFKQVLPQRQEW 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,517,715
Number of Sequences: 37544
Number of extensions: 370386
Number of successful extensions: 845
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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