BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0947 (709 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0) 48 6e-06 SB_49265| Best HMM Match : efhand (HMM E-Value=0.68) 30 2.1 SB_55298| Best HMM Match : THAP (HMM E-Value=2.4e-11) 29 2.8 SB_10597| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=8.2e-34) 28 8.5 >SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0) Length = 537 Score = 48.4 bits (110), Expect = 6e-06 Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 8/148 (5%) Frame = +2 Query: 290 VLSVMLLFPISDAYENHKKTEE-NEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN 466 V + LF + + +K + +E + +E+ +IF+ +Q I N+C T AL+ SV N Sbjct: 27 VYGFIFLFKWIEERRSRRKIQHIDESFVENEEIVNDIFFAQQVIPNSCATHALL-SVLLN 85 Query: 467 TDIIELSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQ-------EGQTNTPS 625 I+L + ++ K + +K + +G ++ + +H + A+ E + S Sbjct: 86 CPHIDLGE-NVSKLKDFSKNFNPENKGYVIGNLPELAMSHNKFARPEPKLLPEKTNSISS 144 Query: 626 AEDPVNHHFISFVQKDGALYELNGRKAF 709 A HF+S+V G L+EL+G K + Sbjct: 145 ARALEAFHFVSYVPIKGRLFELDGLKPY 172 >SB_49265| Best HMM Match : efhand (HMM E-Value=0.68) Length = 720 Score = 29.9 bits (64), Expect = 2.1 Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 2/90 (2%) Frame = +2 Query: 125 LFYRVTEMATETLVPLES-NPDVLN-KFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLS 298 L Y TE T L LE P+ N K +K P + V+ +P +L R S Sbjct: 222 LVYEYTEPQTIPLGFLEEVMPEKTNRKPPEKQPAPIHQRLTSVIRKNPLSLEHCERKPRS 281 Query: 299 VMLLFPISDAYENHKKTEENEILSKGQEVS 388 L IS+ E K +ENEILS +E S Sbjct: 282 STTLMAISE--ETMKNHQENEILSSVEESS 309 >SB_55298| Best HMM Match : THAP (HMM E-Value=2.4e-11) Length = 273 Score = 29.5 bits (63), Expect = 2.8 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +2 Query: 590 ELAQEGQTNTPSAEDPVNHHFISFVQK 670 ELA+E ++ + E P +HH ++ QK Sbjct: 220 ELAKEAESGVNNTETPTSHHLVALAQK 246 >SB_10597| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=8.2e-34) Length = 728 Score = 27.9 bits (59), Expect = 8.5 Identities = 12/45 (26%), Positives = 23/45 (51%) Frame = +2 Query: 575 INAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELNGRKAF 709 +N H + A +P + P NHH I+ + ++ L++L K + Sbjct: 504 VNGHPKEALSMFLQSPRSYKPSNHHTITHLVRNPMLFDLGFEKEY 548 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,829,023 Number of Sequences: 59808 Number of extensions: 436763 Number of successful extensions: 980 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 895 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 976 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1865706635 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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