Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0947
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)               48   6e-06
SB_49265| Best HMM Match : efhand (HMM E-Value=0.68)                   30   2.1  
SB_55298| Best HMM Match : THAP (HMM E-Value=2.4e-11)                  29   2.8  
SB_10597| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=8.2e-34)       28   8.5  

>SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)
          Length = 537

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 8/148 (5%)
 Frame = +2

Query: 290 VLSVMLLFPISDAYENHKKTEE-NEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN 466
           V   + LF   +   + +K +  +E   + +E+  +IF+ +Q I N+C T AL+ SV  N
Sbjct: 27  VYGFIFLFKWIEERRSRRKIQHIDESFVENEEIVNDIFFAQQVIPNSCATHALL-SVLLN 85

Query: 467 TDIIELSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQ-------EGQTNTPS 625
              I+L + ++ K  + +K  +   +G ++     +  +H + A+       E   +  S
Sbjct: 86  CPHIDLGE-NVSKLKDFSKNFNPENKGYVIGNLPELAMSHNKFARPEPKLLPEKTNSISS 144

Query: 626 AEDPVNHHFISFVQKDGALYELNGRKAF 709
           A      HF+S+V   G L+EL+G K +
Sbjct: 145 ARALEAFHFVSYVPIKGRLFELDGLKPY 172


>SB_49265| Best HMM Match : efhand (HMM E-Value=0.68)
          Length = 720

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
 Frame = +2

Query: 125 LFYRVTEMATETLVPLES-NPDVLN-KFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLS 298
           L Y  TE  T  L  LE   P+  N K  +K   P    +  V+  +P +L    R   S
Sbjct: 222 LVYEYTEPQTIPLGFLEEVMPEKTNRKPPEKQPAPIHQRLTSVIRKNPLSLEHCERKPRS 281

Query: 299 VMLLFPISDAYENHKKTEENEILSKGQEVS 388
              L  IS+  E  K  +ENEILS  +E S
Sbjct: 282 STTLMAISE--ETMKNHQENEILSSVEESS 309


>SB_55298| Best HMM Match : THAP (HMM E-Value=2.4e-11)
          Length = 273

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 590 ELAQEGQTNTPSAEDPVNHHFISFVQK 670
           ELA+E ++   + E P +HH ++  QK
Sbjct: 220 ELAKEAESGVNNTETPTSHHLVALAQK 246


>SB_10597| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=8.2e-34)
          Length = 728

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 575 INAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELNGRKAF 709
           +N H + A      +P +  P NHH I+ + ++  L++L   K +
Sbjct: 504 VNGHPKEALSMFLQSPRSYKPSNHHTITHLVRNPMLFDLGFEKEY 548


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,829,023
Number of Sequences: 59808
Number of extensions: 436763
Number of successful extensions: 980
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)