Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0947
(709 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin c-t... 127 7e-30
AF125955-1|AAD14718.1| 216|Caenorhabditis elegans Ubiquitin c-t... 126 2e-29
AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin c-t... 123 1e-28
Z46676-9|CAA86665.2| 321|Caenorhabditis elegans Hypothetical pr... 61 9e-10
Z92829-14|CAB07342.2| 337|Caenorhabditis elegans Hypothetical p... 33 0.26
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p... 32 0.46
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr... 32 0.46
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr... 32 0.46
U88308-10|AAB42326.2| 268|Caenorhabditis elegans Hypothetical p... 31 0.61
Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 30 1.4
AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical ... 29 3.3
AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical ... 29 3.3
AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical ... 29 3.3
AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical ... 29 4.3
AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical ... 29 4.3
Z73425-4|CAA97786.1| 667|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 28 5.7
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 28 5.7
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 28 5.7
Z81543-5|CAB04427.2| 507|Caenorhabditis elegans Hypothetical pr... 27 9.9
>AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 3 protein.
Length = 227
Score = 127 bits (307), Expect = 7e-30
Identities = 72/182 (39%), Positives = 107/182 (58%), Gaps = 2/182 (1%)
Frame = +2
Query: 170 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 349
LESNP+ +N FL+K+G+ VDV D E L +VP P L+++L FP ++A E K
Sbjct: 12 LESNPETINPFLKKIGITGL-ECVDVYSFDDEMLQFVPTPQLALILCFPSAEAREFLSKQ 70
Query: 350 EENEILSKGQEVSGNIFYMKQN--ISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAK 523
E E+ G++ G +F+M Q+ I NACGT AL HS+AN + + L G K+ +AK
Sbjct: 71 YE-EVEKNGEKPEG-VFFMNQSEEIGNACGTFALFHSLANLENRVNLGKGKFAKWYEKAK 128
Query: 524 GLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELNGRK 703
++ R LL + AH+E A+EG+T D V++HFI++V K+G LYE++
Sbjct: 129 LVNEDERSDLLSGDTDLAEAHEETAEEGET---EQSDHVDYHFITYVNKNGQLYEIDSCA 185
Query: 704 AF 709
F
Sbjct: 186 PF 187
>AF125955-1|AAD14718.1| 216|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 1 protein.
Length = 216
Score = 126 bits (303), Expect = 2e-29
Identities = 75/183 (40%), Positives = 103/183 (56%), Gaps = 2/183 (1%)
Frame = +2
Query: 167 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 346
PLESNP V+N ++K+GV VDV+ D E++ +P +V+L FP +KK
Sbjct: 7 PLESNPSVINPMIEKMGVSGV-KTVDVLFFDDESIG---KPQHAVILCFP------EYKK 56
Query: 347 TEE--NEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEA 520
+E I + + ++F+MKQ ISNACGT AL HS+AN D I L DG K+L EA
Sbjct: 57 VDEIMKPIYEQAKAADDSVFFMKQKISNACGTFALFHSLANLEDRINLGDGSFAKWLAEA 116
Query: 521 KGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELNGR 700
K + R L + + H A +GQT PS + V HHFI FV K+G LYE++ R
Sbjct: 117 KKVGIEERSDFLANNAELAGIHAAAATDGQT-APSGD--VEHHFICFVGKNGILYEIDSR 173
Query: 701 KAF 709
+ F
Sbjct: 174 RPF 176
>AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 2 protein.
Length = 249
Score = 123 bits (296), Expect = 1e-28
Identities = 71/182 (39%), Positives = 104/182 (57%), Gaps = 2/182 (1%)
Frame = +2
Query: 170 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 349
LESNP+ +N FL K+GV VDV D E L ++P P L+++L FP S E K
Sbjct: 11 LESNPETINPFLSKIGVSGV-ECVDVFSFDDEMLQFIPTPQLALILCFPSSGVREFRAKQ 69
Query: 350 EENEILSKGQEVSGNIFYM--KQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAK 523
E E+ G++ G IF+M K+ I +ACGT +L HS+AN + + L +G K+ +AK
Sbjct: 70 YE-EVEKNGKKPDG-IFFMNQKKEIGHACGTFSLFHSLANLENRVNLGNGKFSKWFEKAK 127
Query: 524 GLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELNGRK 703
+ R LL + AHKE A+EG+T P + V +HFI++V K+G L+E++
Sbjct: 128 LVGEGERSDLLLADTDLAEAHKETAEEGETEHP---EHVAYHFITYVNKNGQLFEIDSCS 184
Query: 704 AF 709
F
Sbjct: 185 PF 186
>Z46676-9|CAA86665.2| 321|Caenorhabditis elegans Hypothetical
protein C08B11.7 protein.
Length = 321
Score = 60.9 bits (141), Expect = 9e-10
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 2/178 (1%)
Frame = +2
Query: 170 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 349
+ES+P V + L+ GV + ++ LD + + RP ++ LF ++
Sbjct: 10 IESDPGVFTEMLRGFGVDGL-QVEELYSLDDDKA--MTRPTYGLIFLF-------KWRQG 59
Query: 350 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 529
+E + ++ NIF+ Q I NAC T AL++ + N D + ++ A L
Sbjct: 60 DETTGIPSDKQ---NIFFAHQTIQNACATQALINLLMNVEDTDVKLGNILNQYKEFAIDL 116
Query: 530 DATARGKLLEKSEGIINAHKELAQEG--QTNTPSAEDPVNHHFISFVQKDGALYELNG 697
D RG L SE I H +++ + + E N+HF+++V +YEL+G
Sbjct: 117 DPNTRGHCLSNSEEIRTVHNSFSRQTLFELDIKGGESEDNYHFVTYVPIGNKVYELDG 174
>Z92829-14|CAB07342.2| 337|Caenorhabditis elegans Hypothetical
protein F10A3.8 protein.
Length = 337
Score = 32.7 bits (71), Expect = 0.26
Identities = 10/23 (43%), Positives = 19/23 (82%)
Frame = +3
Query: 3 LPFY*LITFINSTIWYVFNSIVN 71
LPF+ L+ +N+++W++ NS+VN
Sbjct: 134 LPFWILLVILNASVWFLLNSLVN 156
>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
protein F36H1.2c protein.
Length = 1427
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 482 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 628
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1051 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1099
>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical protein
F36H1.2b protein.
Length = 1379
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 482 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 628
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1022 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1070
>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein
F36H1.2a protein.
Length = 1398
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 482 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 628
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1022 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1070
>U88308-10|AAB42326.2| 268|Caenorhabditis elegans Hypothetical
protein C32E8.9 protein.
Length = 268
Score = 31.5 bits (68), Expect = 0.61
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = +2
Query: 455 VANNTDIIELSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAED 634
+ ++TDI G F G+ + G E EGI+ + LA G+ N SAE+
Sbjct: 135 ICSSTDIRIAHSGSKIAFFQSKMGIVPSWGGA--EYMEGIMGRGRALAAMGRANVMSAEE 192
Query: 635 PVNHHFISFVQK 670
+ ++ +V K
Sbjct: 193 AKDQGYVDYVYK 204
>Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical
protein T07D4.4c protein.
Length = 613
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 131 YRVTEMATETL---VPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 268
Y+ T+ ATE VP+ ++ +LNKF+QK K +VDV DP++
Sbjct: 155 YKFTKPATEEAHEQVPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 203
>Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical
protein T07D4.4b protein.
Length = 638
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 131 YRVTEMATETL---VPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 268
Y+ T+ ATE VP+ ++ +LNKF+QK K +VDV DP++
Sbjct: 180 YKFTKPATEEAHEQVPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 228
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 131 YRVTEMATETL---VPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 268
Y+ T+ ATE VP+ ++ +LNKF+QK K +VDV DP++
Sbjct: 564 YKFTKPATEEAHEQVPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 612
>AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical
protein Y71H10B.1c protein.
Length = 570
Score = 29.1 bits (62), Expect = 3.3
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +2
Query: 323 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 490
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 316 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 373
Query: 491 --GHMQKFLNEA-KGLDATARGKLLEK 562
GHM+ L + K LD +R K + K
Sbjct: 374 EMGHMESTLADIYKNLDGASRHKPVVK 400
>AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical
protein Y71H10B.1a protein.
Length = 556
Score = 29.1 bits (62), Expect = 3.3
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +2
Query: 323 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 490
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 302 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 359
Query: 491 --GHMQKFLNEA-KGLDATARGKLLEK 562
GHM+ L + K LD +R K + K
Sbjct: 360 EMGHMESTLADIYKNLDGASRHKPVVK 386
>AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical
protein Y71H10B.1b protein.
Length = 559
Score = 29.1 bits (62), Expect = 3.3
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +2
Query: 323 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 490
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 305 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 362
Query: 491 --GHMQKFLNEA-KGLDATARGKLLEK 562
GHM+ L + K LD +R K + K
Sbjct: 363 EMGHMESTLADIYKNLDGASRHKPVVK 389
>AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical
protein C54E4.2a protein.
Length = 226
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = -1
Query: 670 FLDKADKMMVDGIFST--WCICLAF 602
F+D D M+VDG S WC C F
Sbjct: 116 FIDMCDDMVVDGSISVDEWCDCFTF 140
>AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical
protein C54E4.2b protein.
Length = 234
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = -1
Query: 670 FLDKADKMMVDGIFST--WCICLAF 602
F+D D M+VDG S WC C F
Sbjct: 124 FIDMCDDMVVDGSISVDEWCDCFTF 148
>Z73425-4|CAA97786.1| 667|Caenorhabditis elegans Hypothetical
protein F12F6.8 protein.
Length = 667
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 124 LSRLPVHRQ*QMKKYLRRFTIELKTYQIVELMK 26
L R+P H Q+++YL +++ K +IV L K
Sbjct: 572 LERVPTHLTDQIREYLANYSLRTKFRKIVSLSK 604
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
protein C05C12.3 protein.
Length = 1694
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +2
Query: 245 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 421
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 262 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 320
Query: 422 NACGTIALVHSVANNTDIIELSDGH 496
T+ +V NNT + EL+D H
Sbjct: 321 GKDSTVTYATNVFNNTRLKELNDNH 345
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +2
Query: 245 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 421
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 262 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 320
Query: 422 NACGTIALVHSVANNTDIIELSDGH 496
T+ +V NNT + EL+D H
Sbjct: 321 GKDSTVTYATNVFNNTRLKELNDNH 345
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +2
Query: 245 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 421
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 249 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 307
Query: 422 NACGTIALVHSVANNTDIIELSDGH 496
T+ +V NNT + EL+D H
Sbjct: 308 GKDSTVTYATNVFNNTRLKELNDNH 332
>Z81543-5|CAB04427.2| 507|Caenorhabditis elegans Hypothetical
protein F49B2.5 protein.
Length = 507
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 386 SGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKG 526
SGN QNIS + +AL A D + + + LN+ +G
Sbjct: 46 SGNTIDKNQNISQSANFVALFQYDARTDDDLSFKKDDILEILNDTQG 92
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,536,200
Number of Sequences: 27780
Number of extensions: 344260
Number of successful extensions: 1005
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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