Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0945
         (763 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.7  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   4.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.1  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 611 QKPYTISQYFKKTSVVKHFQLAHN 682
           Q P T    F  T +V HF   HN
Sbjct: 81  QSPQTQPARFYSTPIVPHFAYNHN 104


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 379 PRLINVSLPYFGDTFT 332
           P+ + V +P++G TFT
Sbjct: 259 PKKLIVGIPFYGRTFT 274


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 8    PRPSEPKPTSPARGAPCRSTNEALARRG 91
            P P E KP S      C  TN A  R+G
Sbjct: 1386 PLPEELKPQSGYFKIVCYFTNWAWYRKG 1413


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 2    VLPRPSEPKPTSPARGAPCRSTNEALARRGRHGT 103
            V P  S  +P     G+PCR+ + + A   R GT
Sbjct: 913  VSPLTSPRQPAETHAGSPCRN-SASPASSDRSGT 945


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,968
Number of Sequences: 336
Number of extensions: 3174
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)