BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0944 (754 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.2 SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 27 2.9 SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 27 3.8 SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 5.0 SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.6 >SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 377 Score = 28.3 bits (60), Expect = 1.2 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = -3 Query: 389 CSRRSGTSRPLVFRRTLIAGSN 324 CS +GT +P +F+ T + G+N Sbjct: 228 CSTHTGTKKPYIFKETRLLGNN 249 >SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1131 Score = 27.1 bits (57), Expect = 2.9 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = +2 Query: 89 ALCGFVEQGQAIVCYQCNSHNDSRCIMED 175 ALCG V +VC++C + RC + D Sbjct: 816 ALCGIVGTEGLLVCFKCGTCVHERCYVCD 844 >SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 126 Score = 26.6 bits (56), Expect = 3.8 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = +3 Query: 120 QSSATNATVTTTPDASWRTCR-TRCGSRAS 206 Q+ ++ ++T+P WR C R GSRAS Sbjct: 15 QNQSSEGQLSTSPPRRWRNCTLQRHGSRAS 44 >SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 676 Score = 26.2 bits (55), Expect = 5.0 Identities = 14/39 (35%), Positives = 24/39 (61%) Frame = -3 Query: 677 CLSFIYIVLLICLAYLSFSAMY*QRLILSMKYIFRFIFS 561 CL F +I+L++C+A L +SA + +I +I IF+ Sbjct: 465 CLRFYFIILVVCIASL-YSAFW--PVIYRFYFISALIFT 500 >SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 398 Score = 25.8 bits (54), Expect = 6.6 Identities = 21/68 (30%), Positives = 29/68 (42%) Frame = +2 Query: 188 LRQPCKSTDTMCRKISQVVEFEMNGMPPDNRVIRGCGWDESNYKGRCYQRSGFGGRQEVC 367 L P S++T R + V+ E G + V E NY GRCY +E C Sbjct: 247 LLPPIDSSETSTRYHKRQVDMEAFGEEIEEVVASY----EKNYNGRCYI------SEEAC 296 Query: 368 SCLTDGCN 391 S T+ C+ Sbjct: 297 SKATNDCS 304 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,772,043 Number of Sequences: 5004 Number of extensions: 51623 Number of successful extensions: 154 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 147 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 154 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 359287726 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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