Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0944
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0529 + 3874865-3876285,3876352-3876367                           31   1.3  
04_03_0410 - 15569740-15570213                                         30   2.3  
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287...    29   4.0  
09_04_0436 - 17558603-17559265,17559322-17559384                       28   9.2  

>01_01_0529 + 3874865-3876285,3876352-3876367
          Length = 478

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 267 GMPFISNSTTWLIFLHIVSVDLHGCRSVSGRSSMMHRES 151
           G   +  +TTW+I +H+    L GC S S   S+ H+ +
Sbjct: 406 GNYIVPEATTWMIKVHMKKKILLGCTSYSKNGSLSHQNT 444


>04_03_0410 - 15569740-15570213
          Length = 157

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +3

Query: 198 RASPLTQCAGXXXXXXXXXXTACPRITESSEGAGGMKATTRAVATSDQGSAED 356
           RA P   C G           A  R++++ EGA G ++   +  ++  GS E+
Sbjct: 73  RADPTPPCLGSDAGNRVAVAAAALRVSDAGEGAAGSRSDASSSLSTGGGSKEE 125


>08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,
            2875909-2875947,2876309-2876354,2877380-2877922,
            2878827-2880847,2880972-2881215,2881642-2881684,
            2881923-2881962,2883580-2883675,2883712-2883759,
            2883964-2884290
          Length = 1498

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = -2

Query: 216  VSVDLHGCRSVSGRSSMMHR 157
            V  DLHGC S SG SS M R
Sbjct: 1122 VRFDLHGCESSSGASSFMPR 1141


>09_04_0436 - 17558603-17559265,17559322-17559384
          Length = 241

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
 Frame = +3

Query: 123 SSAT---NATVTTTPDASWRT----CRTRCGSRAS 206
           SSAT   NA+ T TP  SWRT    C+    SRAS
Sbjct: 167 SSATPPPNASATPTPSLSWRTTPPPCQRHPSSRAS 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,269,536
Number of Sequences: 37544
Number of extensions: 349251
Number of successful extensions: 1064
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)