Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0944
(754 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5524| Best HMM Match : Glyco_hydro_31 (HMM E-Value=1.7e-10) 31 1.3
SB_46608| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_15477| Best HMM Match : UPAR_LY6 (HMM E-Value=0.0049) 29 3.1
SB_8405| Best HMM Match : PAN (HMM E-Value=0.044) 29 3.1
SB_43658| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42) 29 5.4
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 29 5.4
SB_10837| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42) 29 5.4
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13) 28 7.1
SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015) 28 7.1
SB_58724| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_32176| Best HMM Match : Keratin_B2 (HMM E-Value=0.53) 28 9.4
SB_8524| Best HMM Match : Keratin_B2 (HMM E-Value=0.53) 28 9.4
>SB_5524| Best HMM Match : Glyco_hydro_31 (HMM E-Value=1.7e-10)
Length = 718
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +2
Query: 287 RGCGWDESNYKG--RCYQRSGFGGRQEV 364
RGC W++S KG CY GFGG + V
Sbjct: 137 RGCTWEQSANKGVPWCYYPEGFGGYKMV 164
>SB_46608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 89 ALCGFVEQGQAIVCYQCNSHNDSRC-IMEDLPDTLRQPCKSTDTMCRKI 232
A C ++ + CNS ND+ C +E L +++ PC S D C I
Sbjct: 18 AFCNSIDAFSNSINAPCNS-NDALCDSIEALSNSIDAPCNSNDAFCDSI 65
>SB_15477| Best HMM Match : UPAR_LY6 (HMM E-Value=0.0049)
Length = 132
Score = 29.5 bits (63), Expect = 3.1
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 8/121 (6%)
Frame = +2
Query: 56 MNKMAYFFVFAALCGFVEQGQAIVCYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKIS 235
M +A FF+ A V C+ C C E +T C +D C K+
Sbjct: 1 MKILAAFFLLGANVSLVLSQNRTSCFTCTG-----CKGEYGTET----CLKSDEKCFKM- 50
Query: 236 QVVEFEMNGMPPDNRVIRGCG-----WDESNYKGRCYQRSGFG-GRQEVC--SCLTDGCN 391
+V +++ P VI+GC W S Y+G C + FG G +C C +D CN
Sbjct: 51 EVRDYKSLDKP---YVIKGCTGDSIFWRRSCYEG-CKENREFGSGTYRICIYCCDSDRCN 106
Query: 392 S 394
+
Sbjct: 107 A 107
>SB_8405| Best HMM Match : PAN (HMM E-Value=0.044)
Length = 387
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +2
Query: 86 AALCGFVEQGQAIVCYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVVEFEMNG 262
+ L G G+A C CN +D +C L T P KS C++I Q F +G
Sbjct: 97 SGLSGLSSSGEASACL-CNCGSDKQCEAHGLGMTSDNPAKS----CKEILQKNRFAKSG 150
>SB_43658| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)
Length = 457
Score = 28.7 bits (61), Expect = 5.4
Identities = 24/83 (28%), Positives = 32/83 (38%)
Frame = +2
Query: 143 SHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVVEFEMNGMPPDNRVIRGCGWDESNYKG 322
S N RCI D + ST+T C ++E NG + V +GC D +Y
Sbjct: 11 SVNVYRCICSDCRSNAGEQTCSTETGCFSSLFLLE---NGQ---SSVTKGCLKDADHYNM 64
Query: 323 RCYQRSGFGGRQEVCSCLTDGCN 391
C G + C D CN
Sbjct: 65 MCRGPRGKPNLHDTRCCTHDLCN 87
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 28.7 bits (61), Expect = 5.4
Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 2/123 (1%)
Frame = +2
Query: 77 FVFAALCGFVEQGQAIVCYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQ-VVEFE 253
+V +C Q + C + + D +C+ E + QPC ++ T R +S V E
Sbjct: 2 YVRQRVCTERRQVLSCTCDKGFALKDGKCLGESHMPCVTQPCHASPTRARTLSAFTVVHE 61
Query: 254 MNGM-PPDNRVIRGCGWDESNYKGRCYQRSGFGGRQEVCSCLTDGCNSASLPVMGTTVML 430
GM + R + C D KG + G + C+T C+++ P T+
Sbjct: 62 TRGMYALERRQVPSCTCD----KGFALKDGKCLGESHM-PCVTQPCHAS--PTRARTLSA 114
Query: 431 LTL 439
T+
Sbjct: 115 FTV 117
>SB_10837| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)
Length = 386
Score = 28.7 bits (61), Expect = 5.4
Identities = 24/83 (28%), Positives = 32/83 (38%)
Frame = +2
Query: 143 SHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVVEFEMNGMPPDNRVIRGCGWDESNYKG 322
S N RCI D + ST+T C ++E NG + V +GC D +Y
Sbjct: 14 SVNVYRCICSDCRSNAGEQTCSTETGCFSSLFLLE---NGQ---SSVTKGCLKDADHYNM 67
Query: 323 RCYQRSGFGGRQEVCSCLTDGCN 391
C G + C D CN
Sbjct: 68 MCRGPRGKPNLHDTRCCTHDLCN 90
>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
Length = 1287
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +2
Query: 182 DTLRQPCKSTDTMCRKISQVVEFEMNGMPPDNRVIRGCGWDESNYKGRCYQ--RSGFGGR 355
+T+ +P KS ++ + MN + ++ R G ++ GRC+ R+G R
Sbjct: 1185 ETVEEPLKSLESS--HAVNALNHSMNNGGDNTKINRKPGLNQ----GRCFNCNRTGHIAR 1238
Query: 356 QEVCSCLTDGCNSASL 403
VC + CNS +
Sbjct: 1239 NPVCPAKSQNCNSCGI 1254
>SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)
Length = 779
Score = 28.3 bits (60), Expect = 7.1
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = +3
Query: 72 TFSFSRLCAVLWSKAKQSSATNATVTTTPDASWRTCRTRCGSRASPLTQCAGXXXXXXXX 251
T +S +CA + + K SAT ATV T T T + CA
Sbjct: 336 TKGYSVMCATVATNTKCYSATCATVATNTKCYSATRATVATNTKCYSATCATMATSTKCY 395
Query: 252 XXTACPRITESSEGAGGMKAT 314
T CP + +++G M AT
Sbjct: 396 SVT-CPTVATNTKGYSVMCAT 415
>SB_58724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -3
Query: 668 FIYIVLLICLAYLSFSAMY*QRLILSMKYIFRFIFSFRERLYQCIFRFKL 519
FI+I+ L+ +A L + Q L++++ RF+ S RER + R +L
Sbjct: 41 FIFILFLLFVAILYYFRRRQQIHTLALQFGRRFVPSIRERYHTYTVRLRL 90
>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2978
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 364 LLVPDRRLQLSVVTSYGNNSDAPHASTPEVLAITLQPT 477
LLVP + +V+T Y + ++P S EVLA T T
Sbjct: 1666 LLVPQAEILPTVLTLYMGDGNSPLPSAAEVLACTPDTT 1703
>SB_32176| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)
Length = 194
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 48 SRQ*IKWRTFSFSRLCAVLWSKAKQSSATNATVTTTPDASWRTCRT 185
+R + T +S +CA + +K SAT ATV T TC T
Sbjct: 43 TRATVATNTKCYSVMCATVATKTNCYSATRATVATNTKCYSVTCAT 88
>SB_8524| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)
Length = 194
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 48 SRQ*IKWRTFSFSRLCAVLWSKAKQSSATNATVTTTPDASWRTCRT 185
+R + T +S +CA + +K SAT ATV T TC T
Sbjct: 43 TRATVATNTKCYSVMCATVATKTNCYSATRATVATNTKCYSVTCAT 88
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,318,001
Number of Sequences: 59808
Number of extensions: 418860
Number of successful extensions: 1257
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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