Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0944
         (754 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    25   3.3  
AY524130-1|AAS17758.1|  211|Anopheles gambiae superoxide dismuta...    25   3.3  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    25   3.3  
Z49832-1|CAA89993.1|  155|Anopheles gambiae serine proteinase pr...    24   5.8  
AY579078-1|AAT81602.1|  425|Anopheles gambiae neuropeptide F rec...    23   7.7  

>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 24/75 (32%), Positives = 32/75 (42%)
 Frame = +1

Query: 223 QEDQPGRGVRDERHAPG*QSHQRVRVG*KQLQGPLLPAIRVRRKTRGLLVPDRRLQLSVV 402
           Q+  PG GV+     P  Q HQ+ +   +Q Q  LLP     R+    +V   R  LS  
Sbjct: 233 QQHPPGAGVQGAGPIPSQQKHQQHQ---QQQQSVLLPKHGTARQHSPKIVKKTR-HLS-- 286

Query: 403 TSYGNNSDAPHASTP 447
           TS  +  DA     P
Sbjct: 287 TSSADEPDACDRKAP 301


>AY524130-1|AAS17758.1|  211|Anopheles gambiae superoxide dismutase
           2 protein.
          Length = 211

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 210 VDLHGCRSVSGRSSMMHRE 154
           V L+G RSV GR+ ++H E
Sbjct: 123 VSLYGARSVIGRAIVIHAE 141


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 83  FAALCGFVEQGQAIVCYQCNSHNDSRCIM 169
           F+A+   V+ G+    ++  +H D RC+M
Sbjct: 551 FSAIQRVVDAGRRAKSFRRTNHRDKRCLM 579


>Z49832-1|CAA89993.1|  155|Anopheles gambiae serine proteinase
           protein.
          Length = 155

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 239 VVEFEMNGMPPDNRVIRGCGWDESNYKGRCYQRSGFG 349
           VVE E   + P+  +   C W E N  G      GFG
Sbjct: 60  VVELE-EYVKPNKAICVACLWREPNVPGDLMDAVGFG 95


>AY579078-1|AAT81602.1|  425|Anopheles gambiae neuropeptide F
           receptor protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 8/37 (21%), Positives = 20/37 (54%)
 Frame = -3

Query: 704 RLTHQCYLNCLSFIYIVLLICLAYLSFSAMY*QRLIL 594
           R+ +  +  C+ ++  +L++ +AYL        RL++
Sbjct: 210 RVYYSAFTLCVQYVLPILIVSMAYLRIYLKLKHRLVV 246


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 722,832
Number of Sequences: 2352
Number of extensions: 13404
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77755161
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)