Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0944
         (754 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF471398-1|ABO69624.1|  531|Homo sapiens mahogunin variant 2.2 p...    31   5.9  
EF471397-1|ABO69623.1|  555|Homo sapiens mahogunin variant 1.2 p...    31   5.9  
BC050389-1|AAH50389.1|  576|Homo sapiens mahogunin, ring finger ...    31   5.9  
AB011116-1|BAA25470.1|  583|Homo sapiens KIAA0544 protein protein.     31   5.9  

>EF471398-1|ABO69624.1|  531|Homo sapiens mahogunin variant 2.2
           protein.
          Length = 531

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 140 NSHNDSRCI--MEDLPDTLRQPCKSTDTMCRKISQVVEFEMNGMP 268
           NS N + C+  + DL DTL  PC+    +C   +  + ++ N  P
Sbjct: 272 NSDNSNECVVCLSDLRDTLILPCRHL-CLCTSCADTLRYQANNCP 315


>EF471397-1|ABO69623.1|  555|Homo sapiens mahogunin variant 1.2
           protein.
          Length = 555

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 140 NSHNDSRCI--MEDLPDTLRQPCKSTDTMCRKISQVVEFEMNGMP 268
           NS N + C+  + DL DTL  PC+    +C   +  + ++ N  P
Sbjct: 272 NSDNSNECVVCLSDLRDTLILPCRHL-CLCTSCADTLRYQANNCP 315


>BC050389-1|AAH50389.1|  576|Homo sapiens mahogunin, ring finger 1
           protein.
          Length = 576

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 140 NSHNDSRCI--MEDLPDTLRQPCKSTDTMCRKISQVVEFEMNGMP 268
           NS N + C+  + DL DTL  PC+    +C   +  + ++ N  P
Sbjct: 271 NSDNSNECVVCLSDLRDTLILPCRHL-CLCTSCADTLRYQANNCP 314


>AB011116-1|BAA25470.1|  583|Homo sapiens KIAA0544 protein protein.
          Length = 583

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 140 NSHNDSRCI--MEDLPDTLRQPCKSTDTMCRKISQVVEFEMNGMP 268
           NS N + C+  + DL DTL  PC+    +C   +  + ++ N  P
Sbjct: 302 NSDNSNECVVCLSDLRDTLILPCRHL-CLCTSCADTLRYQANNCP 345


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,766,505
Number of Sequences: 237096
Number of extensions: 1845562
Number of successful extensions: 4897
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4897
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)