Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0944
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41531-6|AAA83160.1|  144|Caenorhabditis elegans Hypothetical pr...    34   0.094
Z74038-4|CAA98495.1|  125|Caenorhabditis elegans Hypothetical pr...    33   0.29 
AF045646-4|AAK29837.2|  295|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF045646-3|AAK29836.2|  432|Caenorhabditis elegans Hypothetical ...    30   1.5  
U88168-6|AAC24401.1|  127|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    29   2.7  
AF016664-10|AAB66064.3|  330|Caenorhabditis elegans Serpentine r...    29   2.7  
Z74038-7|CAE17835.1|  132|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF002198-6|AAF99938.1|  295|Caenorhabditis elegans Serpentine re...    29   3.5  
AF039041-5|AAB94187.1|  128|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z49966-7|CAD57696.1|  125|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AF016451-13|AAB66007.1|  445|Caenorhabditis elegans Activated in...    28   8.2  
AF016451-5|AAB65995.1|  438|Caenorhabditis elegans Activated in ...    28   8.2  

>U41531-6|AAA83160.1|  144|Caenorhabditis elegans Hypothetical
           protein T07D1.3 protein.
          Length = 144

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +2

Query: 296 GWDESNYKGRCYQRSGFGGRQEVCSCLTDGCNSASLPVMGTTVMLLTLALLKF*PSLSN 472
           GW +      C +   +G + E+C C  D CNS    V  T++ L T  L+ F P L N
Sbjct: 89  GWQQKKTGEYCRKSRDYGKKGEICCCADDMCNS----VRQTSLALFTSILIIF-PVLLN 142


>Z74038-4|CAA98495.1|  125|Caenorhabditis elegans Hypothetical
           protein F58B4.3 protein.
          Length = 125

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
 Frame = +2

Query: 176 LPDTL-RQPCKSTDTMCRKISQVVEFEMNGMPPDNRVIRGCGWDESNYKGRCYQRSGFGG 352
           +PDT  RQ C      C K   VV+F         + +        N    C   S FG 
Sbjct: 31  VPDTSQRQECGIGSLTCVK---VVDFTRGTYTKQCQTMNCTLNGMQNAAANCQNSSAFGV 87

Query: 353 RQEVCSCLTDGCNSA 397
               C C  DGCNS+
Sbjct: 88  NGATCCCYGDGCNSS 102


>AF045646-4|AAK29837.2|  295|Caenorhabditis elegans Hypothetical
           protein F56B3.2b protein.
          Length = 295

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
 Frame = +2

Query: 89  ALCGFVEQGQAIVCYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVVEFE-MNGM 265
           A CG  E G   +  QC    +    ++ L + L+ P +S    C   +   +   M  +
Sbjct: 152 AQCGGGE-GMECMKGQCQCQQNFHPAVDVLTNPLKNPSQSCSRDCESENLSKDTSCMKAV 210

Query: 266 PPDNR--VIRGCGWDESNYKGRCYQRSGFGGRQEVC 367
           P ++   + + C  +   Y+GRC  R GF  +   C
Sbjct: 211 PLNSLCFIQKQCPQNSGCYRGRCMCRCGFAAKNGKC 246


>AF045646-3|AAK29836.2|  432|Caenorhabditis elegans Hypothetical
           protein F56B3.2a protein.
          Length = 432

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
 Frame = +2

Query: 89  ALCGFVEQGQAIVCYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVVEFE-MNGM 265
           A CG  E G   +  QC    +    ++ L + L+ P +S    C   +   +   M  +
Sbjct: 289 AQCGGGE-GMECMKGQCQCQQNFHPAVDVLTNPLKNPSQSCSRDCESENLSKDTSCMKAV 347

Query: 266 PPDNR--VIRGCGWDESNYKGRCYQRSGFGGRQEVC 367
           P ++   + + C  +   Y+GRC  R GF  +   C
Sbjct: 348 PLNSLCFIQKQCPQNSGCYRGRCMCRCGFAAKNGKC 383


>U88168-6|AAC24401.1|  127|Caenorhabditis elegans Hypothetical
           protein K11H12.7 protein.
          Length = 127

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 26/111 (23%), Positives = 40/111 (36%)
 Frame = +2

Query: 65  MAYFFVFAALCGFVEQGQAIVCYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVV 244
           M +  VFA+L        A+ CY CNS N   C+          P KS   M        
Sbjct: 1   MRFLIVFASLFAV---SAALNCYICNSLNQPECVHNYEKFNKICPVKSFGGMKSVKPLGC 57

Query: 245 EFEMNGMPPDNRVIRGCGWDESNYKGRCYQRSGFGGRQEVCSCLTDGCNSA 397
                 +  +  ++R C +   + + R   +   G  +    C  + CNSA
Sbjct: 58  RVSRQYVKEETSIVRECAYTGEDIE-RKSNKGSLGVSRVYSQCSENLCNSA 107


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 490 VTCVHHSSKDNLNRKIH*YKRSLKLKINLKIYFIDNIRRC*YIALKDKY 636
           +T V   +KD  N  ++  + S+    NL I+ I N+R   +IA++ KY
Sbjct: 12  LTKVKKKTKDTKNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKY 60


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 27/101 (26%), Positives = 44/101 (43%)
 Frame = +2

Query: 89   ALCGFVEQGQAIVCYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVVEFEMNGMP 268
            A CG ++ G   +C Q    +  +C     P   +QP       C  I +V         
Sbjct: 1526 ANCGNIQCGTNQICIQ----DSCQC----RPGYYQQPGSCLQDRCNCIQEVES------- 1570

Query: 269  PDNRVIRGCGWDESNYKGRCYQRSGFGGRQEVCSCLTDGCN 391
             D+ + R CG ++   + +C  RSG+   QE  +C++D CN
Sbjct: 1571 -DSCLNRQCGMNQVCIQDQCQCRSGYLVLQE--TCISDRCN 1608


>AF016664-10|AAB66064.3|  330|Caenorhabditis elegans Serpentine
           receptor, class i protein37 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/33 (45%), Positives = 24/33 (72%)
 Frame = -1

Query: 583 ISLDLFLVLENVCINVSSDLNYPSNYDEHKSPV 485
           I++DLFL+L+++  ++S     PSNYD H+S V
Sbjct: 211 ITIDLFLLLKSMQKSLS-----PSNYDRHRSAV 238


>Z74038-7|CAE17835.1|  132|Caenorhabditis elegans Hypothetical
           protein F58B4.6 protein.
          Length = 132

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 326 CYQRSGFGGRQEVCSCLTDGCNSA-SLPVMGTTVMLLTLALLKF 454
           C+  +        C C  DGCNS+ S+  +G++++ + +++  F
Sbjct: 88  CFNTTSGSSVMGTCCCYGDGCNSSPSMLPLGSSILAVMISMFIF 131


>AF002198-6|AAF99938.1|  295|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 1 protein.
          Length = 295

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 729 CSSI*VMFAFNTSMLLELFIVYLHCTANLLSVFVFQCDVLTAS 601
           C SI ++    +  +LE  I+YL CT N +S     C VL  S
Sbjct: 129 CPSILILILAISLAMLENLIIYLFCTLN-ISAIPRDCGVLRCS 170


>AF039041-5|AAB94187.1|  128|Caenorhabditis elegans Hypothetical
           protein W03F8.6a protein.
          Length = 128

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 320 GRCYQRSGFG-GRQEVCSCLTDGCNSASLPVMGTTVMLLTLALL 448
           G+C++    G G ++ C C  + CNS++  +  T  +L+ L+L+
Sbjct: 82  GKCFEDGCIGPGDEKNCCCSDNMCNSSNGLIYPTAGILIILSLV 125


>Z49966-7|CAD57696.1|  125|Caenorhabditis elegans Hypothetical
           protein F35C11.7 protein.
          Length = 125

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 108 SKAKQSSATNATVTTTPDASWRTCRTRCGS 197
           + A QSS + +T T    + W TC   CGS
Sbjct: 32  TNAPQSSTSCSTATWLVWSDWSTCSDECGS 61


>AF016451-13|AAB66007.1|  445|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 8 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 104 VEQGQAIVCYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQ 238
           ++Q QA    QC     S C+ +  P T  +P  + +T C  I Q
Sbjct: 190 IQQAQAQCQPQCQQQCQSSCVQQQQPSTQCEP--ACNTQCSDICQ 232


>AF016451-5|AAB65995.1|  438|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 7 protein.
          Length = 438

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 104 VEQGQAIVCYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQ 238
           ++Q QA    QC     S C+ +  P T  +P  + +T C  I Q
Sbjct: 190 IQQAQAQCQPQCQQQCQSSCVQQQQPSTQCEP--ACNTQCSDICQ 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,630,391
Number of Sequences: 27780
Number of extensions: 306738
Number of successful extensions: 1165
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)