Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0944
         (754 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protei...    33   0.27 
At5g42840.1 68418.m05221 DC1 domain-containing protein contains ...    31   0.82 
At1g79390.1 68414.m09252 expressed protein                             29   2.5  
At4g37950.1 68417.m05365 expressed protein                             29   3.3  
At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-r...    28   5.8  

>At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protein
           contains Pfam PF00641: Zn-finger in Ran binding protein
           and others; contains Prosite PS00018: EF-hand
           calcium-binding domain; similar to Zinc finger protein
           265 (Zinc finger, splicing) (Fragment). (SP:Q9R020){Mus
           musculus}
          Length = 849

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
 Frame = +2

Query: 95  CGFVEQGQAIVCYQCNSHNDSRCIMEDLP-DTLRQPCKSTDTMCRK--ISQVVEFEMNGM 265
           C F+   + + C+ C+    +  I+E+ P +T R     TD + ++  +S    F+ +  
Sbjct: 413 CNFLNYRRNMACFHCDCKRPADAILENKPQETYRFTEAQTDRVVKRDDVSNAWNFDFDDD 472

Query: 266 PPDNRVIRGCGWDESNYKGRCYQRSGFGGRQEVCSCLTDGCNSAS 400
             D   +    + +S+ K     R G    +E    L  G   +S
Sbjct: 473 ESDGAEVAAFEYADSSKKNENLLREGLRDPEEEFGNLPPGARESS 517


>At5g42840.1 68418.m05221 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 671

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 95  CGFVEQGQAIVCYQCNSHNDSRCIMEDLPDTLRQP 199
           CG V++  AI C +CN   D RC    LP T+R P
Sbjct: 508 CGIVQKEYAIGCTKCNYFLDFRC--ATLPLTVRLP 540


>At1g79390.1 68414.m09252 expressed protein
          Length = 126

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +2

Query: 44  IISTMNKMAYFFVFAALCGFVE----QGQAIVCYQCNSHNDSRCIMEDLPDTL 190
           ++ T +  ++FF FAALCG +      G   V    N   ++R      PDTL
Sbjct: 15  VMKTRDSRSFFFTFAALCGVIPGVIGYGVMQVTNSSNPELEARLRKSARPDTL 67


>At4g37950.1 68417.m05365 expressed protein 
          Length = 678

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +1

Query: 352 KTRGLLVPDRRLQLSVVTSYGNNSDAPHASTP--EVLAITLQPTVVSRVTCVHHSSKD-N 522
           K  G +  D+R+   ++T     SD  HA  P  + L   + PT +S  T VH++ KD N
Sbjct: 258 KVHGWISSDQRIGFWMITP----SDEFHACGPIKQDLTSHVGPTTLSMFTSVHYAGKDMN 313

Query: 523 LNRK 534
            N K
Sbjct: 314 TNYK 317


>At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1132

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +3

Query: 111 KAKQSSATNATVTTTPDASWR--TCRTRCGSRASPLTQC 221
           K K   A    + +  D  W    CRT+C  R S + +C
Sbjct: 222 KRKAQEALEQALASKKDRKWTFWMCRTKCSKRCSSVEEC 260


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,613,899
Number of Sequences: 28952
Number of extensions: 275071
Number of successful extensions: 846
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)