Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0943
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q17G06 Cluster: Putative uncharacterized protein; n=1; ...    36   1.3  
UniRef50_UPI00015B5115 Cluster: PREDICTED: similar to hCG22882; ...    34   3.9  
UniRef50_Q4QGH0 Cluster: Putative uncharacterized protein; n=3; ...    33   5.1  

>UniRef50_Q17G06 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 121

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 21/94 (22%), Positives = 36/94 (38%)
 Frame = +2

Query: 116 LRMKDSVLVWLGSKEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSMARRLAATLN 295
           L+MKDSV +++G                                   +  +A++L+  L 
Sbjct: 28  LKMKDSVFIYIGEHNAENFDELSMAMLMPTSNEMLSTTIMGEPVGAGSEELAQKLSKKLK 87

Query: 296 HPAYVACGSMFDRFTLPLVERALITEIKSSPECF 397
              Y++     DR   P +E+ L  EI ++ ECF
Sbjct: 88  KQVYLSANVPNDRIVRPTLEQKLFEEINNNLECF 121


>UniRef50_UPI00015B5115 Cluster: PREDICTED: similar to hCG22882;
           n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
           hCG22882 - Nasonia vitripennis
          Length = 127

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 263 SMARRLAATLNHPAYVACGSMFDRFTLPLVERALITEIKSSPE 391
           ++A RLA     P YV+     D  TLP VE+ +  E K  PE
Sbjct: 81  NVASRLAKKTGKPVYVSFNVNVDNLTLPNVEKRIHEEFKKHPE 123


>UniRef50_Q4QGH0 Cluster: Putative uncharacterized protein; n=3;
            Leishmania|Rep: Putative uncharacterized protein -
            Leishmania major
          Length = 1607

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 408  PQRTHCSCGRRAALLICMDGPLIHESSSL 494
            PQRT CSC  R   L+C+ GP  H  S+L
Sbjct: 1303 PQRTRCSCSSRGR-LVCLVGPSGHGKSTL 1330


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 589,430,330
Number of Sequences: 1657284
Number of extensions: 9880246
Number of successful extensions: 21860
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21859
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)