Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0943
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2396| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_55928| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_47047| Best HMM Match : DUF761 (HMM E-Value=3.2)                    29   4.8  
SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)               29   4.8  
SB_17340| Best HMM Match : 7tm_3 (HMM E-Value=0)                       29   4.8  
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_39855| Best HMM Match : Ins_element1 (HMM E-Value=2.9)              28   8.4  
SB_27491| Best HMM Match : C1_3 (HMM E-Value=4.8)                      28   8.4  

>SB_2396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -1

Query: 469 GPSIQINNAARRPQLQCVLCGQVSETFRATFNFCNKCSFNKRQSEPIEHTAAGD 308
           G  +  +++A  P +      +    F+    FC K S  KR+ +PI+  A  D
Sbjct: 209 GALVSFSSSAFNPWIYAARNTEYRRAFQQVLGFCEKLSLKKRKVKPIDIPAKRD 262


>SB_55928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = +3

Query: 309 SPAAVCSIGSLCRLLNEHLLQKLKVALNVSET 404
           +PAAVC +G+  + L+E   QK+ + +N+SET
Sbjct: 23  NPAAVCLVGT--QELDEKFYQKIAMEMNLSET 52


>SB_47047| Best HMM Match : DUF761 (HMM E-Value=3.2)
          Length = 389

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query: 166 RLLLASEPHQD*ILHSQCHHSTYHFSA--PYLKLMDAPLTPYVFNATP 29
           R++L+S P+Q    H   H S YH     PYL+ +    +P+ F   P
Sbjct: 42  RMVLSSSPYQ----HRASHLSLYHSQGGDPYLERVSPDYSPHFFQLHP 85


>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
          Length = 1704

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query: 166  RLLLASEPHQD*ILHSQCHHSTYHFSA--PYLKLMDAPLTPYVFNATP 29
            R++L+S P+Q    H   H S YH     PYL+ +    +P+ F   P
Sbjct: 1520 RMVLSSSPYQ----HRASHLSLYHSQGGDPYLERVSPDYSPHFFQLHP 1563


>SB_17340| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 890

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +2

Query: 278 LAATLNHPAYVACGSMFDRFTLPLVERALITEIKSSP--ECF*DLTTEDTLQLRTASGII 451
           +   L   A +   +      +PLV+ +  +E  SSP  + F      D  Q +  + II
Sbjct: 208 IVGALTSRAALPLANFLQAVRIPLVDASATSEELSSPLYKTFFRTIPPDVNQAKAVADII 267

Query: 452 DLYGW 466
           DLY W
Sbjct: 268 DLYQW 272


>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1822

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +1

Query: 496 EGGLHNIKM---STNSTSVIRKVFEMAELILRLNYKN 597
           +GGL+ IK    +  ST++ RK+    +LI RLN++N
Sbjct: 606 DGGLYAIKRIPWNPKSTALNRKITREVQLISRLNHEN 642


>SB_39855| Best HMM Match : Ins_element1 (HMM E-Value=2.9)
          Length = 76

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 436 RPQLQCVLCGQVSETFRATFNFCNKCSFNKRQ 341
           R  +Q V C + + T   TF FC +C + +R+
Sbjct: 7   RVWVQAVKCPECAYTNDYTFLFCQQCGYRRRE 38


>SB_27491| Best HMM Match : C1_3 (HMM E-Value=4.8)
          Length = 76

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 427 LQCVLCGQVSETFRATFNFCNKCSFNKRQ 341
           +Q V C + + T   TF FC +C +++R+
Sbjct: 10  VQAVKCPECAYTNDYTFLFCQQCGYSRRE 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,345,297
Number of Sequences: 59808
Number of extensions: 315816
Number of successful extensions: 675
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)