Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0943
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-1924|AAF55118.1|  868|Drosophila melanogaster CG3837-PA...    31   2.0  
AE014298-3023|AAF50903.1|   95|Drosophila melanogaster CG15456-P...    29   4.6  
BT028775-1|ABI34156.1|  220|Drosophila melanogaster IP02067p pro...    29   6.1  
AE014134-2221|AAF53203.1|  220|Drosophila melanogaster CG17031-P...    29   6.1  

>AE014297-1924|AAF55118.1|  868|Drosophila melanogaster CG3837-PA
           protein.
          Length = 868

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 436 RPQLQCVLCGQVSETFRATFNFCNKC-SFNKRQSEP 332
           RPQ QC LCG +S  F    N   +C + N  Q  P
Sbjct: 187 RPQSQCPLCGSLSADFEFIRNSSERCWNVNTTQLRP 222


>AE014298-3023|AAF50903.1|   95|Drosophila melanogaster CG15456-PA
           protein.
          Length = 95

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 321 VCSIGSLCRLLNEHLLQKLKVALNVSET*PQRTHCSCGRRAALLICMDGPLIHESSS 491
           +C+    C LL E LL      L++S        C  GRR +  + +DG L+H   S
Sbjct: 11  ICNFSGQCHLLREFLLAS-SPDLDIS--------CRTGRRGSFEVSIDGQLVHSKLS 58


>BT028775-1|ABI34156.1|  220|Drosophila melanogaster IP02067p
           protein.
          Length = 220

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 496 EGGLHNIKMSTNSTSVIRKVFEMAELILRLNYKNSFI*KCSL 621
           EGGL  I+ S N T  IRK     E +L+   K + +  C+L
Sbjct: 41  EGGLRGIQRSRNGTGFIRKSKFKQETLLKPPKKPTLVMVCNL 82


>AE014134-2221|AAF53203.1|  220|Drosophila melanogaster CG17031-PA
           protein.
          Length = 220

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 496 EGGLHNIKMSTNSTSVIRKVFEMAELILRLNYKNSFI*KCSL 621
           EGGL  I+ S N T  IRK     E +L+   K + +  C+L
Sbjct: 41  EGGLRGIQRSRNGTGFIRKSKFKQETLLKPPKKPTLVMVCNL 82


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,493,787
Number of Sequences: 53049
Number of extensions: 466826
Number of successful extensions: 1261
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)