Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0942
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce... 30 0.28
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.5
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 27 2.6
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 3.4
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 3.4
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 26 4.5
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 26 5.9
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 25 7.9
>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 30.3 bits (65), Expect = 0.28
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +1
Query: 1 DAKSEKPASSEDKDTPIRQIMTIIEHKIR--NLEKRKSKLTSYRDLQKAGKELNSDQKVA 174
D +++ ++++DTP+ + + +R N EK+ SKL + R ++ KE+
Sbjct: 73 DILNQQVTQTDEQDTPVLSLSKKSKKALRKSNAEKKDSKLRTSRRRERLRKEMVGRVTSV 132
Query: 175 VAKYDEVAQTL 207
VA E A+ L
Sbjct: 133 VAVNAETAKAL 143
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.9 bits (59), Expect = 1.5
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Frame = -3
Query: 497 PSSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPICIRQSR-ISKTSFIL 321
P + +S + S + +S N+ + +SA+P + S I+ +S
Sbjct: 690 PVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITASSSNT 749
Query: 320 LVSAA*RTQASFLACFFASRSEEIAIAVTCFERSLANSRVWATSSYLATAT 168
L+S+ + A + ++ S + A + L NS ATS YL++++
Sbjct: 750 LLSSITSSSAIVSSTTVSNISSNLPSATASSQSQLTNSSTLATSLYLSSSS 800
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/85 (21%), Positives = 41/85 (48%)
Frame = +1
Query: 4 AKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK 183
A K ASS D+P+R+ +++ + + + +SY N+D+ + +
Sbjct: 379 ANKHKTASSATVDSPLRRSLSV------DAMQSNASFSSYSSTS------NTDKSLRPSS 426
Query: 184 YDEVAQTLEFARDLSKQVTAIAISS 258
Y V+++ F D+S+ I++++
Sbjct: 427 YSAVSESSNFTHDVSRDNKEISLNA 451
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -3
Query: 494 SSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPI 363
SSF TS Y+ S+ FK SSV L + + AS+LPI
Sbjct: 440 SSFLIISTFTSSYEHSEPFKVSSVPLTSNNFSSISHSSASSLPI 483
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 3.4
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Frame = -3
Query: 494 SSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLAS--ALPICIRQSRISKTSFIL 321
SSF G TS Y +K SSS LA+ VL+S A P + S ++
Sbjct: 844 SSFFDASGFTSIYNGTKAGFSSSFALASNSESGASDVLSSTIAKPTFKFSTSNSGSTSYS 903
Query: 320 LVSAA*RTQASFLACFFASRSEEIAIAVTCFERSLANSRVWATSSYLATATF*SEFSSFP 141
+ S++ R + + S S I + + + SL +S V SSY+A++ + S+ P
Sbjct: 904 IPSSSSRNEGT------TSYSSNITVTSSTLKPSLTSS-VSTASSYIASSASSNTLSTEP 956
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 688 NMTFFYFCDCTIYQFYQSIHIHE 620
N FFY C C +Y FY ++ E
Sbjct: 38 NFFFFYLCRCCVY-FYHTLENQE 59
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 25.8 bits (54), Expect = 5.9
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +1
Query: 19 PASSEDKDTPI--RQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDE 192
P ED P Q I +K+K+ +LQ AGK+L + Q+ A Y +
Sbjct: 134 PTDQEDPRNPQLDSQYEAFITQGESQTDKKKTSTVQEEELQNAGKKLETVQENPQA-YSK 192
Query: 193 VAQ 201
V Q
Sbjct: 193 VTQ 195
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 91 LEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLE 210
LEK KS L +R+ K+L + V KYD+ ++
Sbjct: 8 LEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIK 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.131 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,588,740
Number of Sequences: 5004
Number of extensions: 48677
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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