Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0942
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368... 33 0.22
04_01_0386 + 5100249-5100562,5100877-5100927,5101201-5101204 31 0.87
11_06_0197 + 21149453-21149630,21149930-21149996,21150142-211502... 30 2.0
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386... 29 2.6
10_08_0426 - 17817975-17818582,17819068-17819209,17819648-178197... 29 3.5
09_02_0513 - 10105746-10106438,10106523-10107040,10107156-101076... 29 4.6
03_03_0114 - 14554964-14555136,14556317-14556474,14557413-145574... 28 6.1
11_06_0730 - 26728241-26729335,26729998-26730660 28 8.1
03_06_0054 + 31313348-31313560,31313662-31313856,31313933-313140... 28 8.1
>05_07_0310 +
29135875-29136052,29136206-29136617,29136723-29136867,
29137944-29138102,29138183-29138242,29138349-29138546
Length = 383
Score = 33.1 bits (72), Expect = 0.22
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = +1
Query: 1 DAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQK--AGKELNSDQKVA 174
D E P + E++ P + MT+ E++ EKRK+ L + +K KEL + Q+++
Sbjct: 227 DKDKESPENEEEEKEPEDKEMTLEEYEKVLEEKRKALLALKAEERKVEVDKELQAMQQLS 286
Query: 175 VAK-YDEVAQTLEFARDLSKQ 234
V K +EV L +DL K+
Sbjct: 287 VKKANEEVFIKLGSDKDLKKK 307
>04_01_0386 + 5100249-5100562,5100877-5100927,5101201-5101204
Length = 122
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/71 (23%), Positives = 31/71 (43%)
Frame = +1
Query: 367 GSADARTDFINGTNGAAKLTEDDLKILDDLYPEVTPKHELNEEGQSGFHLQITRAAEHLY 546
GS D R + A++ D + ++ P +TP H + + + R A HL
Sbjct: 38 GSIDVRAGGAGDGSAASEYCHDAVAAAAEVIPLLTPLHAVPAAPAASDQVSGGRTARHLT 97
Query: 547 SIIDGKPKEVL 579
++ G +E+L
Sbjct: 98 EVVAGGGREIL 108
>11_06_0197 +
21149453-21149630,21149930-21149996,21150142-21150244,
21150901-21150971,21151091-21151154,21151239-21151304,
21151416-21151463,21151544-21151606,21151680-21151736,
21151884-21151950,21151969-21152042,21152176-21152244,
21152323-21152414,21152782-21152860,21153233-21153398,
21153826-21153950,21154089-21154351,21154473-21154569,
21154659-21154820,21154904-21155008,21155935-21156180
Length = 753
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 490 EEGQSGFHLQITRAAEHLYSIIDGKPKEVLGTTYLRIKEIVSTV 621
E Q+ + EH SI++ K +E G +R+KE STV
Sbjct: 512 ELDQTTIRKMVMELREHARSIVEEKAREEAGNVLMRMKERFSTV 555
>12_01_1059 -
10934937-10935446,10938224-10938271,10938383-10938619,
10938711-10938747,10941018-10941286
Length = 366
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 10 SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELN 156
S K +K P R M +EH+ N+EK S+ ++K+ + ++
Sbjct: 290 SRKSTDRREKSRPTRDRMRGVEHRYSNVEKTDKLKFSFDHMEKSRRSID 338
>10_08_0426 -
17817975-17818582,17819068-17819209,17819648-17819745,
17820070-17821897,17822331-17822738,17822891-17822943,
17823461-17823877,17824401-17824605
Length = 1252
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 10 SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK 183
S + S D P+ I+T + HK R + K S+ A K+L+ D +V V +
Sbjct: 475 SYRSDSQGSTDNPLYDILTKLIHKTRPAHRSKKTKISFVAKDVAIKKLSDDSEVQVVE 532
>09_02_0513 -
10105746-10106438,10106523-10107040,10107156-10107695,
10107791-10108103
Length = 687
Score = 28.7 bits (61), Expect = 4.6
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = +1
Query: 298 VRYAAETNKIKEVLLILDCLMQMGSADARTDFINGTNGAAKLTEDDLKILDDLYPEVTPK 477
+ YAA ++ ++E++ +L M + + + AAK+ L ++ D+ E
Sbjct: 309 LHYAA-SDGVREIISMLIQSMPSAMYIPDKEGLTPLHVAAKMGH--LDVIQDMLKECPDS 365
Query: 478 HEL-NEEGQSGFHLQITRAAEHLYSIIDGKP 567
EL + EG++ HL I R E + S I G P
Sbjct: 366 AELVDNEGRNILHLAIERGHEPVVSYILGDP 396
>03_03_0114 -
14554964-14555136,14556317-14556474,14557413-14557486,
14557589-14557703,14557818-14558054,14558157-14558233
Length = 277
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 7 KSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGK 147
K SS T I ++ IE+K+RN+E+ ++ ++ + AGK
Sbjct: 146 KKNSEESSTQWTTGIAEVQLPIEYKLRNIEETEAAKKMLQEKRLAGK 192
>11_06_0730 - 26728241-26729335,26729998-26730660
Length = 585
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 518 K*QELQNTSTP*LMENLKKC*APHTY-ELRRLYQQFMNVDTLIKLVDGAIAEVEE 679
K QEL+ + P L + L+K + + ++ N+DTL KLV A+ E E+
Sbjct: 33 KIQELEIQTVPKLEQMLRKIEEERMHRKAKKERSAVQNLDTLAKLVKSALYEAED 87
>03_06_0054 +
31313348-31313560,31313662-31313856,31313933-31314098,
31314193-31314599
Length = 326
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 337 LLILDCLMQMGSADARTDFINGT 405
LL++ + Q+G++D RTD+ N T
Sbjct: 12 LLVVAAVAQLGASDLRTDYYNST 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.131 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,734,386
Number of Sequences: 37544
Number of extensions: 279872
Number of successful extensions: 519
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -