Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0942
(694 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.) 117 8e-27
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 32 0.38
SB_22971| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23) 31 1.2
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0) 30 1.5
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 30 2.0
SB_933| Best HMM Match : ExoD (HMM E-Value=6) 29 2.7
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15) 29 4.7
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07) 28 6.2
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 28 6.2
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 117 bits (282), Expect = 8e-27
Identities = 74/218 (33%), Positives = 111/218 (50%), Gaps = 7/218 (3%)
Frame = +1
Query: 10 SEKPASSE---DKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVA 180
S KP+ S+ D + + ++E K+RNLEKRK KL Y+ +G+ELN+DQK A+A
Sbjct: 5 SSKPSDSQALMDSSDIAKSGLLLVEKKVRNLEKRKLKLDGYKKQMDSGQELNADQKAAIA 64
Query: 181 KYDEVAQTLEFARDLSKQVTAIAISSXXXXXXXXXXXXWVRYAAETN----KIKEVLLIL 348
D V L+ A+DL KQ + + A+ N K+ EV L L
Sbjct: 65 NLDVVEMNLDMAKDLLKQFQQMHSEYQRQQKKQARRDQVAQQQAQHNADVLKVNEV-LEL 123
Query: 349 DCLMQMGSADARTDFINGTNGAAKLTEDDLKILDDLYPEVTPKHELNEEGQSGFHLQITR 528
LM S D RTDF+NGTNGA +TED +D+ Y +TP +EE Q+
Sbjct: 124 QHLMDSLSEDVRTDFLNGTNGAVVVTEDQFVQIDEFYKLITP----DEESDVPVAKQLRT 179
Query: 529 AAEHLYSIIDGKPKEVLGTTYLRIKEIVSTVHECGYFD 642
A+EH+ ++D V+ + +++ + +CGYF+
Sbjct: 180 ASEHIVKLLDHNNSAVVDKD---LCQMIENIKKCGYFE 214
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 32.3 bits (70), Expect = 0.38
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +1
Query: 37 KDTPIRQIMTIIEHKIRNLEKRKSKLTSY-RDLQKAGKELNSDQKVAVAK 183
KD+ ++ ++ E KIR L+KR S+L S R L+ K+L D+K A+ K
Sbjct: 322 KDSGNQKATSLGEEKIRKLKKRNSELVSIARQLEDKAKKL-QDEKNAILK 370
>SB_22971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +1
Query: 73 EHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLE 210
+ KIRNL+K+ ++ + QKAGK+L +Q + D + + ++
Sbjct: 65 DKKIRNLKKKLRQIEELKTQQKAGKQLEVNQLEKLKNEDALLKEIK 110
>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
Length = 3368
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +1
Query: 10 SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVA 174
+E+P + + T++++ + + ++ T +RD+Q+ GKE NSD ++
Sbjct: 1928 TEQPVAPSASLQTTKAEKTLVKNTAESTKYTETSSTQHRDIQQRGKEQNSDDALS 1982
>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 937
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 445 LDDLYPEVTPKHELNEEGQSGFHLQITRAAEHLYSIIDGKPKEVLGTTYLRIKE 606
L++L P + P ELN+E + LQ+ + +Y + + + TYL + E
Sbjct: 300 LNELKPYLEPSAELNDERRIDIMLQMGFTRDEIYEALSNNRYDEVMATYLLLDE 353
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +1
Query: 4 AKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK 183
AK + E + I ++ +E LE+ + +L+ LQ KEL S++K K
Sbjct: 1684 AKKKNHEEEERLEAEIAELANTVETLRTELEQSQVRLSK---LQTQVKELKSEKKELQRK 1740
Query: 184 YDEVAQTLEFARDLS 228
DE+ + R+LS
Sbjct: 1741 VDELTSEAQRRRNLS 1755
>SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +1
Query: 424 TEDDLKILDDLYPEVTPKHELNEEGQSGFHLQITRAAEHLYSIIDGKPKEVLGTTYLRIK 603
TED++K L D++P + + + + + + A HL ++ G+ LG Y R K
Sbjct: 177 TEDEIKDLKDMFPSI--EESVIKSVLEACNGDVDAATTHLLTMSAGETDLRLGGAYKRTK 234
Query: 604 EIVSTVHE 627
+ + + +
Sbjct: 235 SVFANISQ 242
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 10 SEKPASSEDKDTPIRQIMTIIEHKIRNLEK-RKSKLTSYRDLQKAGKELNSDQKVAVAKY 186
SE A ++KD + + + + KI+ + +KSK +L KAGK + + V K
Sbjct: 861 SESEAEDDEKD--VEEKHEVKQDKIKKKKHDKKSKAKDKDNLAKAGKAIQAILDVTTRKK 918
Query: 187 DEVAQTLE 210
+ AQ+L+
Sbjct: 919 ADAAQSLQ 926
>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
Length = 555
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = -3
Query: 458 YKSSKIFKSSSVNLAAPFVPFMKSVLASALPICIRQSRISKTSFILLVSA 309
Y SS S++N++ PF+P+ V+ P +RQ I K FI LVSA
Sbjct: 82 YPSSMDGVDSTLNMS-PFIPY---VIRPKGPRLLRQGTIMKAGFIGLVSA 127
>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
Length = 2110
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 31 EDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK--YDEVAQT 204
E +D PI +I ++++ N+EK K ++D ++ GK +K K D+ QT
Sbjct: 208 EIEDEPINEISSLVDFVDENIEKSLLKDPLWQDEEEKGKRKKKKKKRKRDKSLQDQTCQT 267
Query: 205 L 207
+
Sbjct: 268 M 268
>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1805
Score = 28.7 bits (61), Expect = 4.7
Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 8/149 (5%)
Frame = +1
Query: 73 EHKIRNLEKRKSKL-TSYRDLQKAGKELNSDQKVAVAKYD---EVAQTLEFARD--LSKQ 234
E ++R L ++ KL T Y DL+K +++ ++ + + + EVAQ E R +K+
Sbjct: 889 EDELRTLREKLEKLETEYTDLEKKHSQISEEKAIVAEQLESEREVAQETEEMRQRLQTKK 948
Query: 235 VTAIAISSXXXXXXXXXXXXWVRYAAETNK-IKEVLLILDCLMQMGSADARTDFIN-GTN 408
+ S + + K +KE+ + D L + SA +
Sbjct: 949 NELEELLSDLEGRITEEEENVLALTEDKKKLLKEIQDLEDSLEEEESARQKLHLEKVSCE 1008
Query: 409 GAAKLTEDDLKILDDLYPEVTPKHELNEE 495
K E+DL +++D +++ + + EE
Sbjct: 1009 AKIKKLEEDLSLVEDTNSKISKEKKTLEE 1037
>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
Length = 1128
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 31 EDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRD 129
ED++ IRQ+ IIE K ++E++ +L RD
Sbjct: 847 EDREDEIRQLRQIIEDKESDIEEQVMELIHLRD 879
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 115 TSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFA-RDLSKQ 234
+SY +QK +EL D A AK++E+ L+ A R+L K+
Sbjct: 497 SSYLAVQKEKEELQDDLLTAQAKFNELQAELDKAHRELQKE 537
>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 808
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +1
Query: 10 SEKPASSEDKDTPIRQIMTIIEHKIRNLEKR--KSKLTSYRDLQKAGKELNSDQKVAVAK 183
SE S +D+ + + +E ++ L SKL + DL A +L ++ V +
Sbjct: 587 SENSQSMQDRILKLEEERNSLEVEVSRLRSELVSSKLKADEDLMNAKTKLKQEELVRSRQ 646
Query: 184 YDEVAQTLE 210
YDE L+
Sbjct: 647 YDERIHLLQ 655
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.131 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,606,709
Number of Sequences: 59808
Number of extensions: 336249
Number of successful extensions: 603
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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