Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0942
         (694 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    31   0.046
AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    28   0.24 
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    25   3.0  
AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein p...    23   9.1  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 30.7 bits (66), Expect = 0.046
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +1

Query: 7   KSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK- 183
           + E+ A+ +D+   +R  +   EH+IRN E   +K  S  D  +A  E    + VA+ + 
Sbjct: 324 QEEQLAAVDDELKKLRTSIEEQEHRIRNREALVAKTDSTIDTYRADIESKKQEYVALKEA 383

Query: 184 YDEVAQTLE 210
           Y  V +TL+
Sbjct: 384 YGTVRRTLQ 392


>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
            anion exchanger protein.
          Length = 1102

 Score = 28.3 bits (60), Expect = 0.24
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
 Frame = +1

Query: 424  TEDDLKILDDLYPEVTPK------HELNEEGQSGFHLQITRAAEHLYSIIDGKPKEVLGT 585
            T+ +LKILDD+ PE+T +      H+L E+G+ G + ++          I  KPK+   T
Sbjct: 1029 TKRELKILDDIMPEMTKRARADDLHQL-EDGEVGIYRRLVGCC------IGAKPKQQPVT 1081

Query: 586  T 588
            T
Sbjct: 1082 T 1082


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
 Frame = +1

Query: 121 YRDLQKAGKELNSDQKVAVA------KYDEVAQTLEFARD 222
           +  L  AG+EL+S  KVA+        YD +  TLE   D
Sbjct: 125 FSSLMNAGQELDSSLKVAMVLKSMPESYDHLTTTLETRSD 164


>AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein
           protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 145 KELNSDQKVAVAKYDEVAQTLEFARDLSKQVTAI 246
           K L   + V +   DE  +  +  RDL  Q+T +
Sbjct: 343 KSLGQMETVEIRFIDEETEAADVERDLRNQITGL 376


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.314    0.131    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 634,342
Number of Sequences: 2352
Number of extensions: 10966
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70250040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)