Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0942
         (694 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT016057-1|AAV36942.1|  961|Drosophila melanogaster LP14942p pro...   144   8e-35
AE014296-3038|AAG22572.1|  961|Drosophila melanogaster CG18811-P...   144   8e-35
AY069296-1|AAL39441.1|  304|Drosophila melanogaster GM14873p pro...    31   2.0  
AY061059-1|AAL28607.1|  611|Drosophila melanogaster LD02975p pro...    31   2.0  
AE014298-2195|AAN09361.1|  611|Drosophila melanogaster CG9281-PC...    31   2.0  
AE014298-2194|AAF48493.1|  611|Drosophila melanogaster CG9281-PB...    31   2.0  
BT001476-1|AAN71231.1|  607|Drosophila melanogaster LD19244p pro...    29   4.5  
AE014134-3368|AAF53983.2| 2759|Drosophila melanogaster CG8677-PA...    29   4.5  

>BT016057-1|AAV36942.1|  961|Drosophila melanogaster LP14942p
           protein.
          Length = 961

 Score =  144 bits (350), Expect = 8e-35
 Identities = 76/200 (38%), Positives = 114/200 (57%)
 Frame = +1

Query: 46  PIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARDL 225
           P++Q++  IEHKIRNLEKRK+KL SYR +Q +GKEL+ DQ  AVAKYD V   LEFAR+L
Sbjct: 108 PLKQLLVTIEHKIRNLEKRKTKLESYRAIQSSGKELSGDQASAVAKYDAVLANLEFAREL 167

Query: 226 SKQVTAIAISSXXXXXXXXXXXXWVRYAAETNKIKEVLLILDCLMQMGSADARTDFINGT 405
           +K +   +  +              +  AET KI+EVL+I + L        R+DF+NG 
Sbjct: 168 AKHIQQQSKEAEKEQKKQARKDNLAKTIAETAKIREVLIIQNVLNCFNDDQVRSDFLNGE 227

Query: 406 NGAAKLTEDDLKILDDLYPEVTPKHELNEEGQSGFHLQITRAAEHLYSIIDGKPKEVLGT 585
           NGA KL   +L++L+  + E   +     +  S F     ++AE  YS I+ +PK     
Sbjct: 228 NGAKKLENTELELLEKFFIETQTRRPETADDVS-FIATAQKSAELFYSTINARPKSFGEV 286

Query: 586 TYLRIKEIVSTVHECGYFDK 645
           ++ +++ +   + + GY DK
Sbjct: 287 SFEKLRSLFQQIQDSGYLDK 306


>AE014296-3038|AAG22572.1|  961|Drosophila melanogaster CG18811-PA
           protein.
          Length = 961

 Score =  144 bits (350), Expect = 8e-35
 Identities = 76/200 (38%), Positives = 114/200 (57%)
 Frame = +1

Query: 46  PIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARDL 225
           P++Q++  IEHKIRNLEKRK+KL SYR +Q +GKEL+ DQ  AVAKYD V   LEFAR+L
Sbjct: 108 PLKQLLVTIEHKIRNLEKRKTKLESYRAIQSSGKELSGDQASAVAKYDAVLANLEFAREL 167

Query: 226 SKQVTAIAISSXXXXXXXXXXXXWVRYAAETNKIKEVLLILDCLMQMGSADARTDFINGT 405
           +K +   +  +              +  AET KI+EVL+I + L        R+DF+NG 
Sbjct: 168 AKHIQQQSKEAEKEQKKQARKDNLAKTIAETAKIREVLIIQNVLNCFNDDQVRSDFLNGE 227

Query: 406 NGAAKLTEDDLKILDDLYPEVTPKHELNEEGQSGFHLQITRAAEHLYSIIDGKPKEVLGT 585
           NGA KL   +L++L+  + E   +     +  S F     ++AE  YS I+ +PK     
Sbjct: 228 NGAKKLENTELELLEKFFIETQTRRPETADDVS-FIATAQKSAELFYSTINARPKSFGEV 286

Query: 586 TYLRIKEIVSTVHECGYFDK 645
           ++ +++ +   + + GY DK
Sbjct: 287 SFEKLRSLFQQIQDSGYLDK 306


>AY069296-1|AAL39441.1|  304|Drosophila melanogaster GM14873p
           protein.
          Length = 304

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
 Frame = +1

Query: 400 GTNGAAKLTEDDLKILDDLYPEVTPKHELNEEGQSGFHLQITRAAEHLYSI--IDGKPKE 573
           G NGA K T     +L  LY ++ P   +  +     HL+I R  +HL+ +  +D  P E
Sbjct: 113 GPNGAGKST-----LLKLLYGDLVPTSGMIRKNS---HLRIARYHQHLHELLDLDASPLE 164

Query: 574 VLGTTYLRIKEIVSTVHECGYFDKTGR 654
            +   +  +KE        G +  TGR
Sbjct: 165 YMMRAFPDVKEKEEMRKIIGRYGLTGR 191


>AY061059-1|AAL28607.1|  611|Drosophila melanogaster LD02975p
           protein.
          Length = 611

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
 Frame = +1

Query: 400 GTNGAAKLTEDDLKILDDLYPEVTPKHELNEEGQSGFHLQITRAAEHLYSI--IDGKPKE 573
           G NGA K T     +L  LY ++ P   +  +     HL+I R  +HL+ +  +D  P E
Sbjct: 420 GPNGAGKST-----LLKLLYGDLVPTSGMIRKNS---HLRIARYHQHLHELLDLDASPLE 471

Query: 574 VLGTTYLRIKEIVSTVHECGYFDKTGR 654
            +   +  +KE        G +  TGR
Sbjct: 472 YMMRAFPDVKEKEEMRKIIGRYGLTGR 498


>AE014298-2195|AAN09361.1|  611|Drosophila melanogaster CG9281-PC,
           isoform C protein.
          Length = 611

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
 Frame = +1

Query: 400 GTNGAAKLTEDDLKILDDLYPEVTPKHELNEEGQSGFHLQITRAAEHLYSI--IDGKPKE 573
           G NGA K T     +L  LY ++ P   +  +     HL+I R  +HL+ +  +D  P E
Sbjct: 420 GPNGAGKST-----LLKLLYGDLVPTSGMIRKNS---HLRIARYHQHLHELLDLDASPLE 471

Query: 574 VLGTTYLRIKEIVSTVHECGYFDKTGR 654
            +   +  +KE        G +  TGR
Sbjct: 472 YMMRAFPDVKEKEEMRKIIGRYGLTGR 498


>AE014298-2194|AAF48493.1|  611|Drosophila melanogaster CG9281-PB,
           isoform B protein.
          Length = 611

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
 Frame = +1

Query: 400 GTNGAAKLTEDDLKILDDLYPEVTPKHELNEEGQSGFHLQITRAAEHLYSI--IDGKPKE 573
           G NGA K T     +L  LY ++ P   +  +     HL+I R  +HL+ +  +D  P E
Sbjct: 420 GPNGAGKST-----LLKLLYGDLVPTSGMIRKNS---HLRIARYHQHLHELLDLDASPLE 471

Query: 574 VLGTTYLRIKEIVSTVHECGYFDKTGR 654
            +   +  +KE        G +  TGR
Sbjct: 472 YMMRAFPDVKEKEEMRKIIGRYGLTGR 498


>BT001476-1|AAN71231.1|  607|Drosophila melanogaster LD19244p
           protein.
          Length = 607

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 28  SEDKDTPIRQIMTIIEHKIR-NLEKRKSKLTSYRDLQKAGKELNSDQKVA 174
           + D +TP+RQ   I + KI+   E+RK +  + R +++  K+    +K A
Sbjct: 58  TNDSETPVRQSRRIAQQKIKEEAERRKQEEVALRTMKQELKKKKKAEKEA 107


>AE014134-3368|AAF53983.2| 2759|Drosophila melanogaster CG8677-PA
            protein.
          Length = 2759

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 28   SEDKDTPIRQIMTIIEHKIR-NLEKRKSKLTSYRDLQKAGKELNSDQKVA 174
            + D +TP+RQ   I + KI+   E+RK +  + R +++  K+    +K A
Sbjct: 1214 TNDSETPVRQSRRIAQQKIKEEAERRKQEEVALRTMKQELKKKKKAEKEA 1263


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.314    0.131    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,792,223
Number of Sequences: 53049
Number of extensions: 491000
Number of successful extensions: 936
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)