BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0942 (694 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g17910.1 68418.m02100 expressed protein 31 0.73 At1g11400.2 68414.m01310 expressed protein 30 1.3 At1g11400.1 68414.m01309 expressed protein 30 1.3 At1g71150.1 68414.m08210 expressed protein ; expression support... 29 2.2 At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UD... 29 3.9 At5g27330.1 68418.m03263 expressed protein 28 5.1 At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom... 28 6.8 At1g71760.1 68414.m08294 hypothetical protein 28 6.8 At5g35810.1 68418.m04303 hypothetical protein 27 8.9 At3g30370.1 68416.m03834 hypothetical protein 27 8.9 At3g26880.1 68416.m03363 self-incompatibility protein-related si... 27 8.9 >At5g17910.1 68418.m02100 expressed protein Length = 1342 Score = 31.1 bits (67), Expect = 0.73 Identities = 16/53 (30%), Positives = 28/53 (52%) Frame = +1 Query: 52 RQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLE 210 RQ+ + E K+ ++ +S T D +K E N+D++ +AK D V+ E Sbjct: 524 RQLSEVSESKVSSIPDTESVCTVLEDDEKKVDENNADRETKIAKVDMVSDNDE 576 >At1g11400.2 68414.m01310 expressed protein Length = 204 Score = 30.3 bits (65), Expect = 1.3 Identities = 17/51 (33%), Positives = 29/51 (56%) Frame = +1 Query: 70 IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARD 222 +E +IR L K+K +LT + + A ++LN +Q +K +E Q L+ D Sbjct: 152 VEKRIRAL-KKKIRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQELKALED 201 >At1g11400.1 68414.m01309 expressed protein Length = 204 Score = 30.3 bits (65), Expect = 1.3 Identities = 17/51 (33%), Positives = 29/51 (56%) Frame = +1 Query: 70 IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARD 222 +E +IR L K+K +LT + + A ++LN +Q +K +E Q L+ D Sbjct: 152 VEKRIRAL-KKKIRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQELKALED 201 >At1g71150.1 68414.m08210 expressed protein ; expression supported by MPSS Length = 351 Score = 29.5 bits (63), Expect = 2.2 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +1 Query: 1 DAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKR 102 D KS K +SSE R++ ++IEH + L+ R Sbjct: 304 DVKSSKNSSSEALSGSCRRLQSLIEHMVTELDTR 337 >At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative similar to sucrose synthase GI:6682841 from [Citrus unshiu] Length = 942 Score = 28.7 bits (61), Expect = 3.9 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = +1 Query: 109 KLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARDLSKQVT 240 KL L +++N DQK A +Y E+ L+F + L+K+VT Sbjct: 766 KLLKMGSLYGFWRQVNEDQKKAKKRYIEMLYNLQF-KQLTKKVT 808 >At5g27330.1 68418.m03263 expressed protein Length = 628 Score = 28.3 bits (60), Expect = 5.1 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%) Frame = +1 Query: 34 DKDTPIRQIMTIIEHKIRNLEKRK---SKLTSYRDLQKAGKELNSDQ 165 D++T IR + IR LE + S++ RDL K+G +L S++ Sbjct: 141 DRETEIRDLKREANGLIRKLESEREEFSRVCDERDLVKSGFDLQSEE 187 >At5g16780.1 68418.m01965 SART-1 family protein contains Pfam domain, PF03343: SART-1 family Length = 820 Score = 27.9 bits (59), Expect = 6.8 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = +1 Query: 85 RNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARDLS 228 RN++K+KSKL D GKE + K + +T EF R L+ Sbjct: 649 RNMDKKKSKLVGIVD-DDGGKESKDKESKDRFKDIRIERTDEFGRTLT 695 >At1g71760.1 68414.m08294 hypothetical protein Length = 259 Score = 27.9 bits (59), Expect = 6.8 Identities = 11/35 (31%), Positives = 21/35 (60%) Frame = +1 Query: 391 FINGTNGAAKLTEDDLKILDDLYPEVTPKHELNEE 495 F+ N + K+ +++ + D +PEV + E+NEE Sbjct: 56 FVQSFNMSRKVADEEAHAVGDSFPEVYVEGEVNEE 90 >At5g35810.1 68418.m04303 hypothetical protein Length = 347 Score = 27.5 bits (58), Expect = 8.9 Identities = 18/52 (34%), Positives = 25/52 (48%) Frame = -3 Query: 425 VNLAAPFVPFMKSVLASALPICIRQSRISKTSFILLVSAA*RTQASFLACFF 270 + L A FV + VLA + + + + K S ILLV A T SF+ F Sbjct: 270 LGLLALFVSIISMVLAFTATLILIRDQEPKWSLILLVYVASATALSFVVLHF 321 >At3g30370.1 68416.m03834 hypothetical protein Length = 179 Score = 27.5 bits (58), Expect = 8.9 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +1 Query: 430 DDLKILDDLYPEVTPKHELNEEGQSGFHLQITRAAEHLY 546 D+ +I D+YPE E N+E ++ F + R HLY Sbjct: 35 DEPQIHHDVYPE--SDREENDEDEARFQTHLQRGDGHLY 71 >At3g26880.1 68416.m03363 self-incompatibility protein-related similar to S1 self-incompatibility protein [Papaver rhoeas] GI:452430 Length = 133 Score = 27.5 bits (58), Expect = 8.9 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = +1 Query: 577 LGTTYLRIKEIVSTVHECGYFDKTGRWCN 663 +G YL+I E++S + ++ T WCN Sbjct: 51 IGVKYLKIGEVMSFSFKTNFWGTTEFWCN 79 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.314 0.131 0.367 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,184,494 Number of Sequences: 28952 Number of extensions: 242352 Number of successful extensions: 464 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 458 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 464 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1477286152 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (22.0 bits)
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