Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0942
(694 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g17910.1 68418.m02100 expressed protein 31 0.73
At1g11400.2 68414.m01310 expressed protein 30 1.3
At1g11400.1 68414.m01309 expressed protein 30 1.3
At1g71150.1 68414.m08210 expressed protein ; expression support... 29 2.2
At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UD... 29 3.9
At5g27330.1 68418.m03263 expressed protein 28 5.1
At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom... 28 6.8
At1g71760.1 68414.m08294 hypothetical protein 28 6.8
At5g35810.1 68418.m04303 hypothetical protein 27 8.9
At3g30370.1 68416.m03834 hypothetical protein 27 8.9
At3g26880.1 68416.m03363 self-incompatibility protein-related si... 27 8.9
>At5g17910.1 68418.m02100 expressed protein
Length = 1342
Score = 31.1 bits (67), Expect = 0.73
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 52 RQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLE 210
RQ+ + E K+ ++ +S T D +K E N+D++ +AK D V+ E
Sbjct: 524 RQLSEVSESKVSSIPDTESVCTVLEDDEKKVDENNADRETKIAKVDMVSDNDE 576
>At1g11400.2 68414.m01310 expressed protein
Length = 204
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +1
Query: 70 IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARD 222
+E +IR L K+K +LT + + A ++LN +Q +K +E Q L+ D
Sbjct: 152 VEKRIRAL-KKKIRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQELKALED 201
>At1g11400.1 68414.m01309 expressed protein
Length = 204
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +1
Query: 70 IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARD 222
+E +IR L K+K +LT + + A ++LN +Q +K +E Q L+ D
Sbjct: 152 VEKRIRAL-KKKIRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQELKALED 201
>At1g71150.1 68414.m08210 expressed protein ; expression supported
by MPSS
Length = 351
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 1 DAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKR 102
D KS K +SSE R++ ++IEH + L+ R
Sbjct: 304 DVKSSKNSSSEALSGSCRRLQSLIEHMVTELDTR 337
>At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UDP
glucosyltransferase, putative similar to sucrose
synthase GI:6682841 from [Citrus unshiu]
Length = 942
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 109 KLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARDLSKQVT 240
KL L +++N DQK A +Y E+ L+F + L+K+VT
Sbjct: 766 KLLKMGSLYGFWRQVNEDQKKAKKRYIEMLYNLQF-KQLTKKVT 808
>At5g27330.1 68418.m03263 expressed protein
Length = 628
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1
Query: 34 DKDTPIRQIMTIIEHKIRNLEKRK---SKLTSYRDLQKAGKELNSDQ 165
D++T IR + IR LE + S++ RDL K+G +L S++
Sbjct: 141 DRETEIRDLKREANGLIRKLESEREEFSRVCDERDLVKSGFDLQSEE 187
>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
domain, PF03343: SART-1 family
Length = 820
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 85 RNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARDLS 228
RN++K+KSKL D GKE + K + +T EF R L+
Sbjct: 649 RNMDKKKSKLVGIVD-DDGGKESKDKESKDRFKDIRIERTDEFGRTLT 695
>At1g71760.1 68414.m08294 hypothetical protein
Length = 259
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 391 FINGTNGAAKLTEDDLKILDDLYPEVTPKHELNEE 495
F+ N + K+ +++ + D +PEV + E+NEE
Sbjct: 56 FVQSFNMSRKVADEEAHAVGDSFPEVYVEGEVNEE 90
>At5g35810.1 68418.m04303 hypothetical protein
Length = 347
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -3
Query: 425 VNLAAPFVPFMKSVLASALPICIRQSRISKTSFILLVSAA*RTQASFLACFF 270
+ L A FV + VLA + + + + K S ILLV A T SF+ F
Sbjct: 270 LGLLALFVSIISMVLAFTATLILIRDQEPKWSLILLVYVASATALSFVVLHF 321
>At3g30370.1 68416.m03834 hypothetical protein
Length = 179
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 430 DDLKILDDLYPEVTPKHELNEEGQSGFHLQITRAAEHLY 546
D+ +I D+YPE E N+E ++ F + R HLY
Sbjct: 35 DEPQIHHDVYPE--SDREENDEDEARFQTHLQRGDGHLY 71
>At3g26880.1 68416.m03363 self-incompatibility protein-related
similar to S1 self-incompatibility protein [Papaver
rhoeas] GI:452430
Length = 133
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 577 LGTTYLRIKEIVSTVHECGYFDKTGRWCN 663
+G YL+I E++S + ++ T WCN
Sbjct: 51 IGVKYLKIGEVMSFSFKTNFWGTTEFWCN 79
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.131 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,184,494
Number of Sequences: 28952
Number of extensions: 242352
Number of successful extensions: 464
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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